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I have a large experiment in which multiple mice were each separately sequenced in multiple 10X channels. So each mouse has multiple channels. I created by model with:
I have a large experiment in which multiple mice were each separately sequenced in multiple 10X channels. So each mouse has multiple channels. I created by model with:
And now I want to remove doublets, but just found out
Should I leave out the "Mouse" covariate? I don't understand what I'm supposed to do here.
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