From cb54b9aa242b1e2717f017ba8dc1d4d0d0831d08 Mon Sep 17 00:00:00 2001 From: Matthew Feickert Date: Fri, 27 Sep 2024 14:41:05 -0500 Subject: [PATCH] ENH: Use pixi to run action as composite (#91) * ENH: Use pixi to run action as composite * Use pixi to manage the environment fully, which removes the needs for micromamba and a Linux container, allowing the action to be run as a 'composite' action. - This allows the action to be used on macOS runners in addition to Linux. - Add pixi project configuration and pixi lock file. - Add 'osx-64' and 'osx-arm64' platforms to pixi environment solves to allow for use on Linux and macOS runners. - Use prefix-dev/setup-pixi GitHub action to setup pixi for the action. - Explicitly enable the 'locked' option for prefix-dev/setup-pixi. - Don't allow for post job cleanup to avoid errors if the action is run multiple times in a workflow (this is a downside of no longer being in a Linux container). - Note: GitHub Actions takes care of cleaning up the environment after each run, so you are not responsible for manually unsetting all environment variables between steps to avoid secret leakage. - Make cmd.sh executable (chmod +x). * Remove use of micromamba in the upload script. * Remove the conda-lock files and the Docker based locking workflow. * Remove Dockerfile. * Note in the README that the runner used can be either Linux or macOS. * Update version numbers of action to v0.5.0. * MNT: Rename script to 'upload_wheels.sh' * As the script is no longer the CMD of a Linux container but is now a standalone Bash script, having a more descriptive name is preferable. --- .gitattributes | 2 + .gitignore | 3 + Dockerfile | 23 - README.md | 3 +- action.yml | 24 +- conda-lock.yml | 1138 --------------------- environment.yml | 6 - lock.sh | 16 - pixi.lock | 1932 ++++++++++++++++++++++++++++++++++++ pixi.toml | 13 + cmd.sh => upload_wheels.sh | 12 - 11 files changed, 1973 insertions(+), 1199 deletions(-) create mode 100644 .gitattributes create mode 100644 .gitignore delete mode 100644 Dockerfile delete mode 100644 conda-lock.yml delete mode 100644 environment.yml delete mode 100644 lock.sh create mode 100644 pixi.lock create mode 100644 pixi.toml rename cmd.sh => upload_wheels.sh (81%) mode change 100644 => 100755 diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..07fe41c --- /dev/null +++ b/.gitattributes @@ -0,0 +1,2 @@ +# GitHub syntax highlighting +pixi.lock linguist-language=YAML linguist-generated=true diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..096b5eb --- /dev/null +++ b/.gitignore @@ -0,0 +1,3 @@ +# pixi environments +.pixi +*.egg-info diff --git a/Dockerfile b/Dockerfile deleted file mode 100644 index 1e0e46a..0000000 --- a/Dockerfile +++ /dev/null @@ -1,23 +0,0 @@ -FROM mambaorg/micromamba:1.4.9-bullseye-slim - -USER mambauser - -SHELL [ "/bin/bash", "-c" ] - -# Use C.UTF-8 locale to avoid issues with unicode encoding -ENV LC_ALL=C.UTF-8 -ENV LANG=C.UTF-8 - -# lock file created by running lock.sh in the top level of the repository -COPY --chown=mambauser conda-lock.yml /conda-lock.yml -COPY --chown=mambauser cmd.sh /cmd.sh -RUN chmod +x /cmd.sh - -# The mambaorg/micromamba base image's entrypoint is -# /usr/local/bin/_entrypoint.sh which ensures the shell environment is -# correctly set for micromamba to be accessible by the given user. -# c.f. https://github.com/mamba-org/micromamba-docker/blob/604ebafb09543a3d852e437886f1c782f0367911/_entrypoint.sh -# Instead of replicating this, continue to use it as the ENTRYPOINT -# and then pass the action's script as CMD. -ENTRYPOINT [ "/usr/local/bin/_entrypoint.sh" ] -CMD [ "/cmd.sh" ] diff --git a/README.md b/README.md index f875b4f..d22d078 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,8 @@ This is a GitHub Action that uploads nightly builds to the [scientific-python ni as recommended in [SPEC4 — Using and Creating Nightly Wheels][]. In a GitHub Actions workflow (`.github/workflows/*.yaml`), use the -following snippet to upload built wheels to the channel: +following snippet on a Linux or macOS runner to upload built wheels to the +channel: ```yml jobs: diff --git a/action.yml b/action.yml index 2aefbb8..03c724f 100644 --- a/action.yml +++ b/action.yml @@ -5,7 +5,7 @@ permissions: contents: read metadata: read author: "Scientific-Python" -version: "0.1.0" +version: "0.5.0" inputs: artifacts_path: @@ -24,5 +24,23 @@ inputs: default: main runs: - using: 'docker' - image: 'Dockerfile' + using: "composite" + steps: + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 + with: + locked: true + cache: true + cache-write: ${{ github.event_name == 'push' && github.ref_name == 'main' }} + # Avoid post cleanup errors if action run multiple times + post-cleanup: false + + - name: Upload wheels + shell: bash + env: + INPUT_ARTIFACTS_PATH: ${{ inputs.artifacts_path }} + INPUT_ANACONDA_NIGHTLY_UPLOAD_ORGANIZATION: ${{ inputs.anaconda_nightly_upload_organization }} + INPUT_ANACONDA_NIGHTLY_UPLOAD_TOKEN: ${{ inputs.anaconda_nightly_upload_token }} + INPUT_ANACONDA_NIGHTLY_UPLOAD_LABELS: ${{ inputs.anaconda_nightly_upload_labels }} + run: | + pixi run upload_wheels.sh diff --git a/conda-lock.yml b/conda-lock.yml deleted file mode 100644 index a8cf57a..0000000 --- a/conda-lock.yml +++ /dev/null @@ -1,1138 +0,0 @@ -# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). 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-# This should be the base image the Docker image built by the GitHub Action uses -BUILD_IMAGE="mambaorg/micromamba:1.4.9-bullseye-slim" -docker pull "${BUILD_IMAGE}" - -# Don't need to ensure emulation possible on non-x86_64 platforms at the -# `docker run` level as the platform is specified in the conda-lock command. -docker run \ - --rm \ - --volume "${PWD}":/work \ - --workdir /work \ - "${BUILD_IMAGE}" \ - /bin/bash -c "\ - micromamba install --yes --channel conda-forge conda-lock && \ - conda-lock lock --micromamba --platform linux-64 --file environment.yml" diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000..17ddc6d --- /dev/null +++ b/pixi.lock @@ -0,0 +1,1932 @@ +version: 5 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - 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--yes \ - --name upload-nightly-action \ - --file /conda-lock.yml - -# 'micromamba' is running as a subprocess and can't modify the parent shell. -# Thus you must initialize your shell before using activate and deactivate. -eval "$(micromamba shell hook --shell bash)" -micromamba activate upload-nightly-action - # trim trailing slashes from $INPUT_ARTIFACTS_PATH INPUT_ARTIFACTS_PATH="${INPUT_ARTIFACTS_PATH%/}"