NAMESPACE

# Generated by roxygen2: do not edit by hand

export(.cciaDecrypt)
export(.cciaEncrypt)
export(.cciaMessageParallel)
export(.cciaStatsName)
export(.cciaStatsType)
export(.cciaStatsTypeIsCategorical)
export(.changeImageColour)
export(.changeImageColours)
export(.createComposite)
export(.execSystem)
export(.flowChangeParentName)
export(.flowChannelsForPop)
export(.flowColorRampBlueHeat)
export(.flowColours)
export(.flowCompensateGs)
export(.flowCompensatePoly)
export(.flowContourLines)
export(.flowCorrectChannelNames)
export(.flowCreateGatingSet)
export(.flowDirectLeavesForPop)
export(.flowDirectLeavesForPopWithAxis)
export(.flowFortifyGs)
export(.flowGateForPop)
export(.flowGatingAxisForPop)
export(.flowLeavesForPop)
export(.flowMatchGatingParamsForPop)
export(.flowNamesForPops)
export(.flowNormRootPath)
export(.flowPlotGatedRaster)
export(.flowPolygonGate)
export(.flowPopIsParent)
export(.flowPopIsRoot)
export(.flowPopParent)
export(.flowPopPath)
export(.flowPopReplaceParent)
export(.flowRasterBuild)
export(.flowRasterContour)
export(.flowRasterPrepPlotly)
export(.flowStatsForPop)
export(.flowTransformFlowSet)
export(.flowTrimPath)
export(.getVersionedVar)
export(.getVersionedVarInList)
export(.normDTCol)
export(.normaliseDT)
export(.optFromList)
export(.plotColourTolBright)
export(.plotColourTolLight)
export(.plotColourTolMuted)
export(.popsApplyFilterToPopDT)
export(.popsGetParentLeaves)
export(.prepForBash)
export(.prepareFlowFrame)
export(.reverseNamedList)
export(.setVersionedVar)
export(.setVersionedVarInList)
export(.trimModuleFunName)
export(AnndataUtils)
export(CciaImage)
export(CciaImageCollection)
export(CciaImageSet)
export(FlowGatingSet)
export(ImagejUtils)
export(JupyterKernelUtils)
export(MultifileLabelPopUtils)
export(NapariUtils)
export(PopulationUtils)
export(ReactiveObject)
export(ReactivePersistentObject)
export(ReactivePersistentObjectCollection)
export(ReactivePersistentObjectSet)
export(SshUtils)
export(TaskCore)
export(TaskLauncher)
export(TaskProcess)
export(adataMatFromPopDT)
export(cciaAppRequirements)
export(cciaApplyPatches)
export(cciaBiocRequirements)
export(cciaCondaCreate)
export(cciaConf)
export(cciaCreateApp)
export(cciaEnv)
export(cciaModels)
export(cciaNapariUtils)
export(cciaPath)
export(cciaRunApp)
export(cciaSetup)
export(cciaUse)
export(convertPixelToPhysical)
export(createForkedTask)
export(createTaskVars)
export(firstSelectedImageFromSet)
export(firstToupper)
export(genUID)
export(handleSystem)
export(initCciaObject)
export(list.as.numeric)
export(optsFromList)
export(plotThemeBar)
export(plotThemeBoxplot)
export(plotThemeDark)
export(plotThemeViolin)
export(popPathsFromPops)
export(popTypesFromPops)
export(prepFilelistToSync)
export(readLogFile)
export(taskDirFiles)
export(taskResultSuccess)
export(theme_darker)
export(theme_light_dark_bg)
export(tracks.aggregate.fun)
export(tracks.apply.fun)
export(tracks.calc.fun)
export(tracks.combine.dt)
export(tracks.fun.time.filter)
export(tracks.measure.fun)
import(data.table)
importFrom(ggplot2,fortify)
importFrom(shiny,reactive)
importFrom(shiny,reactiveVal)