From 6a59a9749450bcf796aab68506302145e5f93efd Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Fri, 6 Dec 2024 13:50:30 +0000 Subject: [PATCH 1/2] Update gitpod vscode extensions to use nf-core extension pack --- .gitpod.yml | 9 +-------- nf_core/pipeline-template/.gitpod.yml | 11 ++--------- 2 files changed, 3 insertions(+), 17 deletions(-) diff --git a/.gitpod.yml b/.gitpod.yml index efe193f35..d5948695b 100644 --- a/.gitpod.yml +++ b/.gitpod.yml @@ -9,11 +9,4 @@ tasks: vscode: extensions: - - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code - - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files - - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar - - mechatroner.rainbow-csv # Highlight columns in csv files in different colors - - nextflow.nextflow # Nextflow syntax highlighting - - oderwat.indent-rainbow # Highlight indentation level - - streetsidesoftware.code-spell-checker # Spelling checker for source code - - charliermarsh.ruff # Code linter Ruff + - nf-core.nf-core-extensionpack # https://github.com/nf-core/vscode-extensionpack diff --git a/nf_core/pipeline-template/.gitpod.yml b/nf_core/pipeline-template/.gitpod.yml index 5907fb59c..b8165fbc0 100644 --- a/nf_core/pipeline-template/.gitpod.yml +++ b/nf_core/pipeline-template/.gitpod.yml @@ -6,13 +6,6 @@ tasks: nextflow self-update vscode: - extensions: # based on nf-core.nf-core-extensionpack + extensions: #{%- if code_linters -%} - - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code - - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files{% endif %} - - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar - - mechatroner.rainbow-csv # Highlight columns in csv files in different colors - - nextflow.nextflow # Nextflow syntax highlighting - - oderwat.indent-rainbow # Highlight indentation level - - streetsidesoftware.code-spell-checker # Spelling checker for source code - - charliermarsh.ruff # Code linter Ruff + - nf-core.nf-core-extensionpack # https://github.com/nf-core/vscode-extensionpack From 0ba1c7007490f10a0f985a5d70fef474b58f0cac Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Fri, 6 Dec 2024 13:55:42 +0000 Subject: [PATCH 2/2] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index a4d8b4487..91d9960a8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -58,6 +58,7 @@ - Update gitpod/workspace-base Docker digest to 12853f7 ([#3309](https://github.com/nf-core/tools/pull/3309)) - Run pre-commit when testing linting the template pipeline ([#3280](https://github.com/nf-core/tools/pull/3280)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.2 ([#3325](https://github.com/nf-core/tools/pull/3325)) +- Update gitpod vscode extensions to use nf-core extension pack ([#3327](https://github.com/nf-core/tools/pull/3327)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]