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When setting the meta.datatype value in the create_data_channels_from_fetchngs function the default value of "illumina" is selected. This is because each row of the samplesheet csv file passed to the function has not been split correctly. This issue can be fixed by modifying the .splitCsv operator in this block of code
Description of the bug
When setting the meta.datatype value in the create_data_channels_from_fetchngs function the default value of "illumina" is selected. This is because each row of the samplesheet csv file passed to the function has not been split correctly. This issue can be fixed by modifying the
.splitCsv
operator in this block of codeto include the option
quote:'"'
Command used and terminal output
No response
Relevant files
samplesheet.csv
System information
No response
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