ontology_detail.html

---
layout: default
---
{% include navbar.html %}
<div class="content">


  <div>
    <div class="page-header">
      <h1>
        {% if page.depicted_by %}
        <img alt="logo" src="{{page.depicted_by}}" style="max-height: 1em;" />
        {% endif %}
        {{ page.title }}
      </h1>
      <p>
        {{page.description}}
      </p>
      {% if page.repository %}
        {% if page.repository contains "https://github.com/" %}
        <a href="{{ page.repository }}">
          <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/{{ page.repository | remove: 'https://github.com/' }}" />
          <img alt="GitHub contributors" src="https://img.shields.io/github/contributors/{{ page.repository | remove: 'https://github.com/' }}" />
          <img alt="GitHub last commit" src="https://img.shields.io/github/last-commit/{{ page.repository | remove: 'https://github.com/' }}" />
          <!--<img alt="GitHub issues" src="https://img.shields.io/github/issues/{{ page.repository | remove: 'https://github.com/' }}" />-->
        </a>
        {% endif %}
      {% endif %}
      {% if page.twitter %}
        <a href="https://twitter.com/{{ page.twitter }}">
          <img alt="Twitter Follow" src="https://img.shields.io/twitter/follow/{{ page.twitter }}?style=social">
        </a>
      {% endif %}
    </div>

  </div>

  {% if page.is_obsolete %}
  <div>
    <div class="alert alert-danger" role="alert">
      This ontology is deprecated!
    </div>
    {% for repl in page.replaced_by %}
    <div class="alert alert-info" role="alert">
      Consider using: <a href="{{repl}}.html">{{repl}}</a>
    </div>
    {% endfor %}
  </div>
  {% endif %}

  {% if page.activity_status == "inactive" %}{% unless page.is_obsolete %}
  <div>
    <div class="alert alert-warning" role="alert">
      This ontology is inactive. For more information see <a href="/docs/OntologyStatus.html">here</a>.
    </div>
  </div>
  {% endunless %}{% endif %}

  {% if page.activity_status == "orphaned" %}{% unless page.is_obsolete %}
  <div>
    <div class="alert alert-warning" role="alert">
      This ontology is orphaned. For more information see <a href="/docs/OntologyStatus.html">here</a>.
    </div>
  </div>
  {% endunless %}{% endif %}

  {% if page.preferredPrefix %}
  {% assign upperPrefix = page.preferredPrefix | upcase %}
  {% if upperPrefix != page.preferredPrefix %}
  <div>
    <div class="alert alert-info" role="alert">
      This ontology uses a mixed-case prefix. Identifiers and URIs
      should use: "{{ page.preferredPrefix }}".
    </div>
  </div>
  {% endif %}
  {% endif %}

  <div class="col-md-12">

    <div class="row">
      <div class="col-md-8">
        <!-- TODO: each ontology should configure which browsers to be exposed in -->
        <a href="http://www.ontobee.org/browser/index.php?o={{page.id}}">
          <button type="button" class="btn btn-default">OntoBee</button>
        </a>
        {% if page.aberowl_id %}
        <a href="http://aber-owl.net/ontology/{{page.aberowl_id | upcase}}">
          <button type="button" class="btn btn-default">AberOWL</button>
        </a>
        {% else %}
        <a href="http://aber-owl.net/ontology/{{page.id | upcase}}">
          <button type="button" class="btn btn-default">AberOWL</button>
        </a>
        {% endif %}
        <a href="http://www.ebi.ac.uk/ols/ontologies/{{page.id}}">
          <button type="button" class="btn btn-default">OLS</button>
        </a>
        {% for b in page.browsers %}
        <a href="{{b.url}}">
          <button type="button" class="btn btn-default">{{b.label}}</button>
        </a>
        {% endfor %}

        {{ content }}

        <div>
          <h2>Products</h2>
          <table class="table">
            <tbody>

              {% for p in page.products %}
              <tr>
                <td>
                  <a href="http://purl.obolibrary.org/obo/{{p.id}}">{{p.id}}</a>
                </td>
                <td>
                  {{p.title}}
                </td>
                <td>
                  {{p.description}}
                  {% if p.page %}
                  <a href="{{p.page}}"> [page]</a>
                  {% endif %}
                </td>
              </tr>
              {% endfor %}
            </tbody>
          </table>
        </div>
        {% if page.usages %}
        <div>
          <h2>Usages</h2>
          {% for p in page.usages %}
          <dl class="dl-horizontal">
            <dt>User</dt> <dd><a href="{{p.user}}">{{p.user}}</a></dd>
            <dt>Description</dt><dd>{{p.description}}</dd>
            {% if p.type %}
            <dt>Type</dt> <dd>{{p.type}}</dd>
            {% endif %}
            {% if p.seeAlso %}
            <dt>See also</dt> <dd><a href="{{p.seeAlso}}">{{p.seeAlso}}</a></dd>
            {% endif %}
            {% if p.examples %}
            <dt>Examples</dt>
            <dd>
              <ul style="padding-left: 20px">
              {% for example in p.examples %}
                <li><a href="{{example.url}}">{{example.description}}</a></li>
              {% endfor %}
              </ul>
            </dd>
            {% endif %}
            {% if p.publications %}
            <dt>Publications</dt>
            <dd>
              <ul style="padding-left: 20px">
              {% for publication in p.publications %}
                <li><a href="{{publication.id}}">{{publication.title}}</a></li>
              {% endfor %}
              </ul>
            </dd>
            {% endif %}
          </dl>
          {% endfor %}
        </div>
        {% endif %}


      </div>


      <div class="col-md-4">
        <dl class="dl-horizontal" style="margin-left: 0">

          <dt>
            ID Space
            <span data-toggle="tooltip"
                  title="ID prefix"
                  data-html="true">
            </span>
          </dt>
          <dd>
            <a href="http://purl.obolibrary.org/obo/{{page.id}}/">{{page.id}}</a>
          </dd>

          <dt>PURL</dt>
          <dd>
            <a href="http://purl.obolibrary.org/obo/{{page.id}}.owl">http://purl.obolibrary.org/obo/{{page.id}}.owl</a>
          </dd>

          <dt>License</dt>
          <dd>
            {% if page.license %}
            <a href="{{page.license.url}}">{{page.license.label}}</a>
            {% if page.license.alert %}
            <div class="alert alert-danger" role="alert">
              <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
              <span class="sr-only">Warning:</span>
              {{page.license.alert}}
            </div>
            {% endif %}
            {% else %}
            <div class="alert alert-danger" role="alert">
              <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
              <span class="sr-only">Warning:</span>
              Not entered
            </div>
            {% endif %}
          </dd>

          <dt>Homepage</dt>
          <dd>
            <a href="{{page.homepage}}">{{page.homepage}}</a>
          </dd>
          {% for p in page.page %}
          <dd>
            <a href="{{p}}">{{p}}</a>
          </dd>
          {% endfor %}

          {% if page.biosharing %}
          <dd>
            <a href="{{page.biosharing}}">{{page.biosharing}}</a>
          </dd>
          {% endif %}

          <dt>Contact</dt>
          <dd>
            <a href="mailto:{{page.contact.email}}">{{page.contact.label}}</a>
          </dd>

          <dt>Trackers</dt>
          <dd>
            <a href="{{page.tracker}}">{{page.tracker}}</a>
          </dd>

          <dt>Domain</dt>
          <dd>
            <a href="/domain/{{page.domain}}.html">{{page.domain}}</a>
          </dd>

          {% if page.mailing_list %}
          <dt>Mail List</dt>
          <dd>
            <a href="{{page.mailing_list}}">{{page.mailing_list}}</a>
          </dd>
          {% endif %}

          {% if page.taxon %}
          <dt>Taxon</dt>
          <dd>
            <a href="http://amigo.geneontology.org/amigo/term/{{page.taxon.id}}">{{page.taxon.label}}</a>
          </dd>
          {% endif %}

          {% if page.exampleClass %}
          <dt>Example</dt>
          <dd>
            <a href="http://purl.obolibrary.org/obo/{{page.exampleClass}}">{{page.exampleClass}}</a>
          </dd>
          {% endif %}

          {% if page.publications %}
          <dt>Cite</dt>
          {% for p in page.publications %}
          <dd>
            <small><a href="{{p.id}}">{{p.title}}</a></small>
          </dd>
          {% endfor %}
          {% endif %}

          {% if page.funded_by %}
          <dt>Funding</dt>
          {% for x in page.funded_by %}
          <dd>
            {{x}}
          </dd>
          {% endfor %}
          {% endif %}

          {% if page.used_by %}
          <dt>Used by</dt>
          {% for x in page.used_by %}
          <dd>
            <a href="{{x.url}}">{{x.label}}</a>
          </dd>
          {% endfor %}
          {% endif %}

          {% if page.dependencies %}
          <dt>Dependencies</dt>
          {% for x in page.dependencies %}
          <dd>
            <a href="{{x.id}}">{{x.id}}</a>
          </dd>
          {% endfor %}
          {% endif %}

          {% if page.jobs %}
          <dt>Jobs</dt>
          {% for p in page.jobs %}
          <dd>
            {% if p.type == "travis-cl" or p.id contains "travis" %}
            <a href="{{p.id}}">
              <img alt="Build Status" src="{{p.id}}.svg?branch=master"/>
            </a>
            {% else %}
            <a href="{{p.id}}">{{p.type}}</a>
            {% endif %}
          </dd>
          {% endfor %}
          {% endif %}

          {% if page.review.date and page.review.document %}
          <dt>OBO Review</dt>
          <dd>{{page.review.date}} <a href="{{page.review.document.link}}">{{page.review.document.label}}</a><dd>
          {% endif %}

        </dl>


        <div class="btn-group" role="group" aria-label="Source">
          <a href="https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/ontology/{{page.id}}.md">
            <button type="button"
                    data-toggle="tooltip"
                    title="See FAQ entry: How is metadata stored?"
                    data-html="true"
                    class="btn btn-default">
              View
            </button>
          </a>
          <a href="https://github.com/OBOFoundry/OBOFoundry.github.io/edit/master/ontology/{{page.id}}.md">

            <button type="button"
                    data-toggle="tooltip"
                    title="See FAQ entry: How I do edit my metadata?"
                    data-html="true"
                    class="btn btn-default">
              Edit</button>
          </a>
          <a href="https://github.com/OBOFoundry/purl.obolibrary.org/blob/master/config/{{page.id}}.yml">

            <button type="button"
                    data-toggle="tooltip"
                    title="See FAQ entry: How I do edit my PURL?"
                    data-html="true"
                    class="btn btn-default">
              PURL</button>
          </a>
          <div>
            Generated by: <a href="{{site.repo_src}}_layouts/ontology_detail.html">_layouts/ontology_detail.html</a><br/> See <a href="/faq/how-do-i-edit-metadata.html">metadata guide</a>
          </div>
          <!-- <button type="button" class="btn btn-default">Help</button> -->
        </div>
      </div>



      <div class="row">

        <footer class="footer">
          <div class="container">
            <p class="text-muted">
              Edit the metadata for this page: <a href="https://github.com/OBOFoundry/OBOFoundry.github.io/edit/master/ontology/{{page.id}}.md">{{page.id}}.md</a> (GitHub will help you create a fork and pull request.)

            </p>
          </div>
        </footer>
      </div>

    </div>

    {% if page.comments %}
    <div>
      <div >
        <h2>Comments Section</h2>
        <p>Feel free to comment on the post but keep it clean and on topic.</p>
        <div id="disqus_thread"></div>
        <script type="text/javascript">
          /* * * CONFIGURATION VARIABLES: EDIT BEFORE PASTING INTO YOUR WEBPAGE * * */
          var disqus_shortname = '{{ site.comments.disqus.short_name }}';

          /* * * DON'T EDIT BELOW THIS LINE * * */
          (function() {
          var dsq = document.createElement('script'); dsq.type = 'text/javascript'; dsq.async = true;
          dsq.src = 'http://' + disqus_shortname + '.disqus.com/embed.js';
          (document.getElementsByTagName('head')[0] || document.getElementsByTagName('body')[0]).appendChild(dsq);
          })();
        </script>
        <noscript>Please enable JavaScript to view the <a href="http://disqus.com/?ref_noscript">comments powered by Disqus.</a></noscript>
        <a href="http://disqus.com" class="dsq-brlink">comments powered by <span class="logo-disqus">Disqus</span></a>
      </div>
    </div>
    {% endif %}

  </div>