NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(export,default)
S3method(export,sig_test_summary)
S3method(get_features,default)
S3method(get_features,sig_test_summary)
export(append_feature_annotations)
export(cbind_feature_counts)
export(compute_fitted_values)
export(cqn_dgelist)
export(define_contrasts)
export(export)
export(feature_counts_to_dgelist)
export(filter_by_read_count)
export(get_features)
export(get_gc_percent)
export(get_sig_test_summary)
export(import_contrasts)
export(import_cutadapt_summary)
export(import_design)
export(import_hisat2_summary)
export(parse_lrt_table)
export(read_feature_counts)
export(replace_with)
export(set_offset)
export(which_k_covered)
export(which_k_covered_across_samples)
export(which_k_covered_each_sample)
importClassesFrom(edgeR,DGEGLM)
importClassesFrom(edgeR,DGEList)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(biomaRt,getBM)
importFrom(cqn,cqn)
importFrom(dplyr,add_count)
importFrom(dplyr,arrange)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,rename)
importFrom(edgeR,"[.DGEGLM")
importFrom(edgeR,"[.DGEList")
importFrom(edgeR,DGEList)
importFrom(edgeR,cpm)
importFrom(edgeR,getCounts)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(limma,decideTests)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_names)
importFrom(magrittr,set_rownames)
importFrom(methods,is)
importFrom(purrr,map)
importFrom(purrr,map_lgl)
importFrom(readr,cols)
importFrom(readr,parse_number)
importFrom(readr,read_file)
importFrom(readr,read_tsv)
importFrom(readr,stop_for_problems)
importFrom(readr,write_tsv)
importFrom(rlang,.data)
importFrom(stats,setNames)
importFrom(stringr,str_replace)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_subset)
importFrom(tibble,as_tibble)
importFrom(tibble,tribble)
importFrom(tidyr,spread_)