From 19c36739168b0fddc9a378e68e23e0337c39d8c9 Mon Sep 17 00:00:00 2001
From: Yangshen0325 <89144088+Yangshen0325@users.noreply.github.com>
Date: Mon, 12 Sep 2022 17:15:19 +0200
Subject: [PATCH] Fix https://github.com/rsetienne/DAISIE/issues/147

Fixes https://github.com/rsetienne/DAISIE/issues/147
Correctly compute number of species at present in IW simulations
---
 R/DAISIE_sim_cr_iw.R | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/R/DAISIE_sim_cr_iw.R b/R/DAISIE_sim_cr_iw.R
index 8090f2f8..d2db9bad 100644
--- a/R/DAISIE_sim_cr_iw.R
+++ b/R/DAISIE_sim_cr_iw.R
@@ -30,7 +30,8 @@ DAISIE_sim_cr_iw <- function(total_time,
         hyper_pars = hyper_pars,
         area_pars = area_pars
       )
-      stac_vec <- unlist(island_replicates)[which(names(unlist(island_replicates)) == "taxon_list.stac")]
+      temp_island_replicates <- island_replicates[[rep]]
+      stac_vec <- unlist(temp_island_replicates)[which(names(unlist(temp_island_replicates)) == "taxon_list.stac")]
       present <- which(stac_vec != 0)
       number_present <- length(present)
     }