From aa33f6f9512e94fd1e37de912396b3f73e507960 Mon Sep 17 00:00:00 2001 From: Shixiang Wang Date: Wed, 30 Oct 2024 16:35:46 +0800 Subject: [PATCH] update readme --- README.Rmd | 5 +++-- README.md | 7 ++++--- 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/README.Rmd b/README.Rmd index d281386..85d462e 100644 --- a/README.Rmd +++ b/README.Rmd @@ -44,10 +44,11 @@ Public omics data from UCSC Xena are supported through [**multiple turn-key Xena ## Installation -Install stable release from CRAN with: +Install stable release from r-universe/CRAN with: ```{r, eval=FALSE} -install.packages("UCSCXenaTools") +install.packages('UCSCXenaTools', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) +#install.packages("UCSCXenaTools") ``` You can also install devel version of **UCSCXenaTools** from github with: diff --git a/README.md b/README.md index fd62846..6570662 100644 --- a/README.md +++ b/README.md @@ -40,10 +40,11 @@ this package?** ## Installation -Install stable release from CRAN with: +Install stable release from r-universe/CRAN with: ``` r -install.packages("UCSCXenaTools") +install.packages('UCSCXenaTools', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) +#install.packages("UCSCXenaTools") ``` You can also install devel version of **UCSCXenaTools** from github @@ -172,7 +173,7 @@ Query and download. XenaQuery(df_todo) %>% XenaDownload() -> xe_download #> This will check url status, please be patient. -#> All downloaded files will under directory /tmp/RtmpyHpIIe. +#> All downloaded files will under directory /tmp/RtmpYsoGw3. #> The 'trans_slash' option is FALSE, keep same directory structure as Xena. #> Creating directories for datasets... #> Downloading TCGA.LUNG.sampleMap/LUNG_clinicalMatrix