diff --git a/DESCRIPTION b/DESCRIPTION index 3d62971..9cd3678 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: UCSCXenaTools Title: Download and Explore Datasets from UCSC Xena Data Hubs -Version: 1.5.0 +Version: 1.6.0 Authors@R: c(person(given = "Shixiang", family = "Wang", diff --git a/NEWS.md b/NEWS.md index 3bf8d1c..54dfc0e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# UCSCXenaTools 1.6.0 + +- Single cell hub was found disabled. +- GDC hub was completely updated. + # UCSCXenaTools 1.5.0 - Bugs fixed. diff --git a/README.Rmd b/README.Rmd index aae3926..9a12681 100644 --- a/README.Rmd +++ b/README.Rmd @@ -77,7 +77,7 @@ Currently, **UCSCXenaTools** supports the following data hubs of UCSC Xena. * UCSC Toil RNAseq Recompute Compendium Hub: * PCAWG Xena Hub: * ATAC-seq Hub: -* Singel Cell Xena Hub: +* Singel Cell Xena Hub: (**Disabled by UCSCXena**) * Kids First Xena Hub: * Treehouse Xena Hub: diff --git a/README.md b/README.md index 22d5a83..0d7125f 100644 --- a/README.md +++ b/README.md @@ -77,6 +77,7 @@ Xena. - PCAWG Xena Hub: - ATAC-seq Hub: - Singel Cell Xena Hub: + (**Disabled by UCSCXena**) - Kids First Xena Hub: - Treehouse Xena Hub: @@ -113,7 +114,7 @@ You can load `XenaData` after loading `UCSCXenaTools` into R. ``` r library(UCSCXenaTools) #> ========================================================================================= -#> UCSCXenaTools version 1.4.8 +#> UCSCXenaTools version 1.5.0 #> Project URL: https://github.com/ropensci/UCSCXenaTools #> Usages: https://cran.r-project.org/web/packages/UCSCXenaTools/vignettes/USCSXenaTools.html #> @@ -170,7 +171,7 @@ Query and download. XenaQuery(df_todo) %>% XenaDownload() -> xe_download #> This will check url status, please be patient. -#> All downloaded files will under directory /var/folders/gm/lw6z28md2594gcnws_38_9f40000gn/T//RtmpfewSeZ. +#> All downloaded files will under directory /var/folders/37/gt0rbmqn61b513tbr8pyz_y40000gn/T//RtmpbXwIKj. #> The 'trans_slash' option is FALSE, keep same directory structure as Xena. #> Creating directories for datasets... #> Downloading TCGA.LUNG.sampleMap/LUNG_clinicalMatrix diff --git a/data/XenaData.rda b/data/XenaData.rda index ec7d579..8c9501a 100644 Binary files a/data/XenaData.rda and b/data/XenaData.rda differ