package BH boost errors env #405
Comments
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I do not why the build error of a "randomly chosen" package off CRAN would be a Rocker bug. Maybe it is (You could use a little bit of Unix + Docker refinment. Instead of RUN mkdir /home/rstudio/.local
RUN mkdir /home/rstudio/.local/share
RUN mkdir /home/rstudio/.local/share/renv
RUN mkdir /home/rstudio/.local/share/renv/binaryso a single Ditto for RUN chmod a+rwx /home/rstudio/.local
RUN chown -R rstudio /home/rstudio/.localwhich I would write as RUN chmod a+rwx /home/rstudio/.local \
&& chown -R rstudio /home/rstudio/.localas each That's not your bug though which is a different issue. I also do not understand why one would want Lastly, we offer several venues to take advantage of prebuilt binaries to avoid whatever building issue you may run into... I suggest we close this as I see no Rocker bug here (yet, so feel free to reformulate if you think Rocker is at fault). |
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Hi, thanks for the response! Pretty new to the Docker environment and really appreciate your help. I follow the guide https://rstudio.github.io/renv/articles/docker.html to use renv and docker, because I thinks it is a good idea.
Could you give me some hints how i can do this? Closing this Issue as you said. Cheers |
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Here is one way: |
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Thank you very much @eddelbuettel it works now. Build from from source now also works, probably was missing some dependancies. Need to have a look how I can use the caching from |
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@HannesOberreiter can you provide a bit more information about what you are doing, e.g. your Note that you can get binary installation on the image you're using with: This works because that image uses a CRAN mirror which has pre-built linux binaries for this distro. You can change the mirror to a snapshot so that you get the same versions each time if you prefer. We do that automatically for you on Of course this should work with |
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@cboettig thank you for your answer. I try to build a workflow were I can use my own I had in mind that the libraries should install on runtime At the moment my "work-in-progress" project looks like this: github project with docker file connected to the dockerhub were it builds my github file automatically /r/hannesoberreiter/melt_graz. I start up the container and link my cache folder, start I think there is something happening at the |
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RSPM is still quite new and it looks like the dust hasn't settled yet in |
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@cboettig thank you very much for the explanation! It sheds a little bit more light into my dark nights to understand how to best work with docker and rocker. :) |
Hi everyone,
I try to build a docker container (
FROM rocker/tidyverse:4.0.0) which should useenvfor version control with caching and the packageqpcR.While installing / compiling the needed packages I run into some trouble, see error message below.
Don't know if this is a problem coming with the ROCKER container.
Thanks! Cheers Hannes
I also added my DOCKERFILE below.
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