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Autoproj osdeps fails #390

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haider8645 opened this issue Dec 29, 2022 · 3 comments
Open

Autoproj osdeps fails #390

haider8645 opened this issue Dec 29, 2022 · 3 comments

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@haider8645
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haider8645 commented Dec 29, 2022 •
edited
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Hello,

the autoproj osdeps command fails with the error shown below. It seems to be related to bundle. The error also happens when I use aup. We created an issue at rubygems. Could someone from the autoproj dev team please collaborate on this issue.

Thanks!

Best,
Haider

--- ERROR REPORT TEMPLATE -------------------------------------------------------

fatal: No live threads left. Deadlock?
6 threads, 6 sleeps current:0x000055ba8e49f380 main thread:0x000055ba8d62cff0
* #<Thread:0x000055ba8d65aea8 sleep_forever>
   rb_thread_t:0x000055ba8d62cff0 native:0x00007fd241d2a740 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:42:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:42:in `deq'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:173:in `process_specs'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:133:in `install_with_worker'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:89:in `call'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:67:in `call'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:244:in `install_in_parallel'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:201:in `install'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:89:in `block in run'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:12:in `block in lock'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:9:in `open'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:9:in `lock'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:71:in `run'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:23:in `install'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli/install.rb:62:in `run'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:260:in `block in install'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/settings.rb:131:in `temporary'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:259:in `install'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/command.rb:27:in `run'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/invocation.rb:127:in `invoke_command'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor.rb:392:in `dispatch'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:34:in `dispatch'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/base.rb:485:in `start'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:28:in `start'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/exe/bundle:45:in `block in <top (required)>'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/friendly_errors.rb:117:in `with_friendly_errors'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/exe/bundle:33:in `<top (required)>'
   /home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/.autoproj/bin/bundle:129:in `load'
   /home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/.autoproj/bin/bundle:129:in `<main>'
* #<Thread:0x000055ba8e5d68c8 /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/timeout-0.3.0/lib/timeout.rb:101 sleep_forever>
   rb_thread_t:0x000055ba8e49f380 native:0x00007fd23d7de700 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/timeout-0.3.0/lib/timeout.rb:105:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/timeout-0.3.0/lib/timeout.rb:105:in `block in create_timeout_thread'
* #<Thread:0x000055ba945d81e0@Parallel Installer Worker #0 /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90 sleep_forever>
   rb_thread_t:0x000055ba93e89ad0 native:0x00007fd23dbe0700 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `block in process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `loop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90:in `block (2 levels) in create_threads'
* #<Thread:0x000055ba945d8078@Parallel Installer Worker #1 /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90 sleep_forever>
   rb_thread_t:0x000055ba935ed9c0 native:0x00007fd23d3dc700 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `block in process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `loop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90:in `block (2 levels) in create_threads'
* #<Thread:0x000055ba945d7ee8@Parallel Installer Worker #2 /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90 sleep_forever>
   rb_thread_t:0x000055ba94d75f90 native:0x00007fd23d9df700 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `block in process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `loop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90:in `block (2 levels) in create_threads'
* #<Thread:0x000055ba945d7da8@Parallel Installer Worker #3 /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90 sleep_forever>
   rb_thread_t:0x000055ba9372c990 native:0x00007fd23d5dd700 int:0
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `pop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:55:in `block in process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `loop'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:54:in `process_queue'
   /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:90:in `block (2 levels) in create_threads'

  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:42:in `pop'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/worker.rb:42:in `deq'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:173:in `process_specs'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:133:in `install_with_worker'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:89:in `call'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer/parallel_installer.rb:67:in `call'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:244:in `install_in_parallel'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:201:in `install'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:89:in `block in run'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:12:in `block in lock'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:9:in `open'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/process_lock.rb:9:in `lock'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:71:in `run'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/installer.rb:23:in `install'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli/install.rb:62:in `run'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:260:in `block in install'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/settings.rb:131:in `temporary'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:259:in `install'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/command.rb:27:in `run'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/invocation.rb:127:in `invoke_command'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor.rb:392:in `dispatch'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:34:in `dispatch'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/vendor/thor/lib/thor/base.rb:485:in `start'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/cli.rb:28:in `start'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/exe/bundle:45:in `block in <top (required)>'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/lib/bundler/friendly_errors.rb:117:in `with_friendly_errors'
  /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/gems/bundler-2.4.1/exe/bundle:33:in `<top (required)>'
  /home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/.autoproj/bin/bundle:129:in `load'
  /home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/.autoproj/bin/bundle:129:in `<main>'

Environment

Bundler       2.4.1
  Platforms   ruby, x86_64-linux
Ruby          2.7.0p0 (2019-12-25 revision 647ee6f091eafcce70ffb75ddf7e121e192ab217) [x86_64-linux]
  Full Path   /usr/bin/ruby2.7
  Config Dir  /etc
RubyGems      3.1.2
  Gem Home    /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0
  Gem Path    /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0
  User Home   /home/dfki.uni-bremen.de/mlodhi
  User Path   /home/dfki.uni-bremen.de/mlodhi/.gem/ruby/2.7.0
  Bin Dir     /home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems/ruby/2.7.0/bin
OpenSSL       
  Compiled    OpenSSL 1.1.1f  31 Mar 2020
  Loaded      OpenSSL 1.1.1f  31 Mar 2020
  Cert File   /usr/lib/ssl/cert.pem
  Cert Dir    /usr/lib/ssl/certs
Tools         
  Git         2.25.1
  RVM         not installed
  rbenv       not installed
  chruby      not installed
Gem.ruby      /usr/bin/ruby2.7
bundle #!     /usr/bin/env /usr/bin/ruby2.7

Bundler Build Metadata

Built At          2022-12-24
Git SHA           f3175f033c
Released Version  true

Bundler settings

bin
  Set for your local app (/home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/.bundle/config): "/home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/bin"
gemfile
  Set via BUNDLE_GEMFILE: "/home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/Gemfile"
path
  Set for your local app (/home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/.bundle/config): "/home/dfki.uni-bremen.de/mlodhi/.local/share/autoproj/gems"
shebang
  Set for your local app (/home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/.bundle/config): "/usr/bin/ruby2.7"

Gemfile

Gemfile

source 'https://rubygems.org'
ruby "~> 2.7.0" if respond_to?(:ruby)
group :default do
  gem "autoproj",
                                 ">= 2.0.0"
  gem "autorespawn",
                                 ">= 0"
  gem "backports",
                                 ">= 0"
  gem "binding_of_caller",
                                 ">= 0"
  gem "bundler",
                                 ">= 0"
  gem "concurrent-ruby",
                                 ">= 0"
  gem "concurrent-ruby-ext",
                                 ">= 0"
  gem "facets",
                                 ">= 0"
  gem "fakefs",
                                 ">= 0"
  gem "flexmock",
                                 ">= 0"
  gem "grape",
                                 ">= 0"
  gem "hoe",
                                 "< 4.0"
  gem "hoe-yard",
                                 ">= 0"
  gem "hooks",
                                 ">= 0"
  gem "kramdown",
                                 ">= 0"
  gem "minitest",
                                 "< 5.16"
  gem "pastel",
                                 ">= 0"
  gem "qtbindings",
                                 ">= 0", git: "https://github.com/rock-core/qtbindings"
  gem "rake-compiler",
                                 "< 0.9.0"
  gem "rb-readline",
                                 ">= 0"
  gem "rbtrace",
                                 ">= 0"
  gem "rest-client",
                                 ">= 0"
  gem "rgl",
                                 ">= 0"
  gem "rice",
                                 "< 4.0.0"
  gem "stackprof",
                                 ">= 0"
  gem "state_machine",
                                 "<= 1.0.3"
  gem "thin",
                                 ">= 0"
  gem "timecop",
                                 ">= 0"
  gem "tty-cursor",
                                 ">= 0"
  gem "tty-progressbar",
                                 ">= 0"
  gem "tty-prompt",
                                 ">= 0"
  gem "tty-table",
                                 ">= 0"
  gem "utilrb",
                                 ">= 3.0.1"
  gem "websocket",
                                 ">= 0"
  gem "xmlrpc",
                                 ">= 0"
  gem "yard",
                                 ">= 0"
end

Gemfile.lock

<No /home/dfki.uni-bremen.de/mlodhi/ROCK/reference-dev/install/gems/Gemfile.lock found>

--- TEMPLATE END ----------------------------------------------------------------
@doudou
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doudou commented Dec 29, 2022

Hi. This is an issue with Bundler 2.4.1.

Switch existing workspaces back to 2.3.6 by editing .autoproj/config.yml and adding a "bundler_version: 2.3.6" entry

When bootstrapping, add --bundler-version=2.3.6 to the bootstrap command line

@haider8645
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@doudou Thanks! that works!

@Priyanka328
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@doudou perfect. Thanks for the solution. it works :)

@deivid-rodriguez deivid-rodriguez mentioned this issue Dec 29, 2022
Closed
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3 participants
@doudou @haider8645 @Priyanka328