From 565c8c4b6a3a68f0acec99f8af4df31c361990ab Mon Sep 17 00:00:00 2001
From: Roberto Rossini <71787608+robomics@users.noreply.github.com>
Date: Mon, 3 Apr 2023 16:24:05 +0200
Subject: [PATCH] Let users decide output stage mode

---
 main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index 75544e8..128277d 100644
--- a/main.nf
+++ b/main.nf
@@ -621,7 +621,7 @@ process merge_interactions {
 }
 
 process call_cliques {
-    publishDir params.outdir, mode: 'copy'
+    publishDir params.outdir
 
     label 'short'