From 0291770bbe12364d69294329e5518ecd57f09d0e Mon Sep 17 00:00:00 2001
From: Roberto Rossini <71787608+robomics@users.noreply.github.com>
Date: Mon, 22 May 2023 11:46:47 +0200
Subject: [PATCH] Bump deps

---
 .github/workflows/ci.yml | 4 +---
 env.yml                  | 5 +++--
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 4c506f8..dcd53f1 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -120,9 +120,7 @@ jobs:
     - name: Generate requirements.txt
       if: steps.cache-dataset.outputs.cache-hit != 'true'
       run: |
-        echo 'cooler==0.8.11' > requirements.txt
-        echo 'matplotlib<3.6' >> requirements.txt
-        echo 'numpy<1.24' >> requirements.txt
+        echo 'cooler==0.9.1' > requirements.txt
 
     - name: Setup Python
       if: steps.cache-dataset.outputs.cache-hit != 'true'
diff --git a/env.yml b/env.yml
index a353c68..a5f7d22 100644
--- a/env.yml
+++ b/env.yml
@@ -10,11 +10,12 @@ channels:
 
 dependencies:
   - python>=3.8
-  - bedtools=2.30.*
-  - bioframe=0.3.*
+  - bedtools=2.31.*
+  - bioframe=0.4.1
   - cooler=0.9.*
   - hicexplorer=3.7.2
   - networkx=3.*
+  - pandas<2
   - procps-ng
   - seaborn=0.12.*
   - statsmodels=0.13.*