DESCRIPTION

Package: raer
Type: Package
Title: RNA editing tools in R
Version: 1.3.1
Authors@R: c(
    person("Kent", "Riemondy", , "kent.riemondy@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0750-1273")),
    person("Kristen", "Wells-Wrasman", , "kristen.wells-wrasman@cuanschutz.edu", role = "aut",
           comment = c(ORCID = "0000-0002-7466-8164")),
    person("Ryan", "Sheridan", , "ryan.sheridan@cuanschutz.edu", role = "ctb",
           comment = c(ORCID = "0000-0003-4012-3147")),
    person("Jay", "Hesselberth", , "jay.hesselberth@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0002-6299-179X")),
    person("RNA Bioscience Initiative", role = c("cph", "fnd"))
    )
Description: Toolkit for identification and statistical testing 
    of RNA editing signals from within R. Provides support for identifying
    sites from bulk-RNA and single cell RNA-seq datasets, and general methods 
    for extraction of allelic read counts from alignment files. Facilitates annotation
    and exploratory analysis of editing signals using Bioconductor packages and resources.
License: MIT + file LICENSE
Imports: 
    stats,
    methods,
    GenomicRanges,
    IRanges,
    Rsamtools,
    BSgenome,
    Biostrings,
    SummarizedExperiment,
    SingleCellExperiment,
    S4Vectors,
    GenomeInfoDb,
    GenomicAlignments,
    GenomicFeatures,
    BiocGenerics,
    BiocParallel,
    rtracklayer,
    Matrix,
    cli
Suggests:
    testthat (>= 3.0.0),
    knitr,
    DESeq2,
    edgeR,
    limma,
    rmarkdown,
    BiocStyle,
    ComplexHeatmap,
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    SNPlocs.Hsapiens.dbSNP144.GRCh38,
    BSgenome.Hsapiens.NCBI.GRCh38,
    scater,
    scran,
    scuttle,
    AnnotationHub,
    covr,
    raerdata,
    txdbmaker 
LinkingTo: 
    Rhtslib
SystemRequirements:
    GNU make
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://rnabioco.github.io/raer, https://github.com/rnabioco/raer
BugReports: https://github.com/rnabioco/raer/issues
biocViews:
    MultipleComparison,
    RNASeq,
    SingleCell,
    Sequencing,
    Coverage,
    Epitranscriptomics,
    FeatureExtraction,
    Annotation,
    Alignment
Config/Needs/website:
    pkgdown,
    rnabioco/rbitemplate
Config/testthat/edition: 3