.gitignore

/lib/med_decompose/Oligotyping/lib/__pycache__
/lib/med_decompose/Oligotyping/utils/__pycache__
/lib/med_decompose/Oligotyping/visualization/__pycache__
/__pycache__
tests/.DS_Store
/lib/med_decompose/Oligotyping/__pycache__/*
/**/*.pyc
tests/__pycache__/
settings.py
db.sqlite3
/__pycache__
/.idea
/dbApp/__pycache__
/dbBackup
**/.DS_Store
sp_config.py
.env
.vscode/
outputs/
*.nhr
*.nin
*.nsq
/**/tempData
*.logfile
/dbBackUp/*
tests/data/smith_subsampled_data/lite/test_data_submission_input_lite_w_abs_paths.csv
symbiodiniaceaeDB/blast.out
symbiodiniaceaeDB/named_seqs_in_SP_remote_db.fa
symbiodiniaceaeDB/symClade_backup/
symbiodiniaceaeDB/unnamedRefSeqs.fasta
fixing_clades
user.csv
cron_jobs/cron_logs/0.log
cron_jobs/cron_logs/1.log
cron_jobs/cron_logs/2.log
app.db
data_available_gold_dataset_11_islands_POC.tsv
eric_quentin_found_poc_C_new.csv
eric_quentin_found_poc_C_old.csv
eric_quentin_found_poc_d.csv
symbiodiniaceaeDB/named_seqs_in_SP_remote_db.fa.ndb
symbiodiniaceaeDB/named_seqs_in_SP_remote_db.fa.not
symbiodiniaceaeDB/named_seqs_in_SP_remote_db.fa.ntf
symbiodiniaceaeDB/named_seqs_in_SP_remote_db.fa.nto