-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html.b
214 lines (208 loc) · 12.3 KB
/
index.html.b
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
Template Name: Academic Education
Author: <a href="http://www.os-templates.com/">OS Templates</a>
Author URI: http://www.os-templates.com/
Licence: Free to use under our free template licence terms
Licence URI: http://www.os-templates.com/template-terms
-->
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>eMED</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<link rel="stylesheet" href="layout/styles/layout.css" type="text/css" />
<!-- Homepage Specific Elements -->
<script type="text/javascript" src="layout/scripts/jquery.min.js"></script>
<script type="text/javascript" src="layout/scripts/jquery.ui.min.js"></script>
<script type="text/javascript" src="layout/scripts/jquery.tabs.setup.js"></script>
<!-- End Homepage Specific Elements -->
</head>
<body id="top">
<div class="wrapper row1">
<div id="header" class="clear">
<div class="logo_head">
<img src="eMED_Logo/logo1.png" width="100%">
</div>
<div class="text_head">
<h1><a href="index.html">eMED</a></h1>
<p><font size="5.5px">A platform for exploring epigenome in mammalian embryonic development</font></p>
</div>
<!--
<div class="fl_right">
<form action="https://google.com/search" method="get" id="sitesearch">
<fieldset>
<strong>Search:</strong>
<input type="text" name=q value="Search On Google…" onfocus="this.value=(this.value=='Search On Google…')? '' : this.value ;" />
<input type="image" src="layout/images/search.gif" id="search" alt="Search" />
</fieldset>
</form>
</div>
-->
</div>
</div>
<!-- ####################################################################################################### -->
<div class="wrapper row2">
<div class="rnd">
<!-- ###### -->
<div id="topnav">
<ul>
<li class="active"><a href="index.html">HomePage</a></li>
<li><a href="search.php">Search</a></li>
<li><a href="pages/style-demo2.html">JBrowser</a></li>
<li><a href="pages/full-width.html">Statistics</a></li>
<li><a href="pages/3-columns.html">Documentations</a></li>
<li><a href="pages/portfolio.html">Downloads</a></li>
<li><a href="pages/gallery.html">Links</a></li>
<li><a href="pages/contacts.html">Contacts</a></li>
<li class="last"><a href="pages/news.html">News</a></li>
</ul>
</div>
<!-- ###### -->
</div>
</div>
<!-- ####################################################################################################### -->
<div class="wrapper">
<div id="featured_slide" class="clear">
<!-- ###### -->
<div class="overlay_left"></div>
<div id="featured_content">
<div class="featured_box" id="fc1"><img src="images/demo/slider/workflow1.png" alt="" />
</div>
<div class="featured_box" id="fc2"><img src="images/demo/slider/fig2.jpg" alt="" />
</div>
<div class="featured_box" id="fc3"><img src="images/demo/slider/fig3.jpg" alt="" />
</div>
<div class="featured_box" id="fc4"><img src="images/demo/slider/fig4.jpg" alt="" />
</div>
<div class="featured_box" id="fc5"><img src="images/demo/slider/fig5.jpg" alt="" />
</div>
</div>
<ul id="featured_tabs">
<li><a href="#fc1">eMED Analysis Workflow</a></li>
<li><a href="#fc2">Embryo Development Process</a></li>
<li><a href="#fc3">Cell fate regulation in early embryo</a></li>
<li><a href="#fc4">H3K4me3 in mouse early embryos</a></li>
<li class="last"><a href="#fc5">Dynamics landscape of histone modification</a></li>
</ul>
<div class="overlay_right"></div>
<!-- ###### -->
</div>
</div>
<!-- ####################################################################################################### -->
<div class="wrapper row3">
<div class="rnd">
<div id="container" class="clear">
<!-- ####################################################################################################### -->
<div id="content">
<div id="comments">
<h2>Video showing mammalian early embryogenesis</h2>
<ul class="commentlist">
<iframe width="600" height="520" src="https://www.youtube.com/embed/dAOWQC-OBv0" frameborder="0" allowfullscreen></iframe>
</ul>
<p class="readmore"><a href="https://www.youtube.com/results?search_query=Embryonic+Development"><b>More Videos »</b></a></p>
</div>
</div>
<div id="column">
<div class="holder">
<h2>Publication</h2>
<h2 class="title"><img src="images/demo/60x60.gif" alt="" / width="60" height="60">Volume 44, Issue D1<br>04 January 2016</h2>
<p><b>RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins</b></p>
<p class="imgholder"><img src="images/demo/240x90.gif" alt="" / width="240" height="48"></p>
<p>It has been revealed that single nucleotide variants (SNVs) that alter RNA structure, also known as RiboSNitches, exhibit 3-fold greater local structure changes than replicates of the same DNA sequence, demonstrated by the fact that depletion of RiboSNitches could result in the alteration of specific RNA shapes at thousands of sites, including 3' UTRs, binding sites of microRNAs and RBPs. However, the network between SNVs and post-transcriptional regulation remains unclear. Here, we developed RBP-Var, a database freely available at <a href= "http://www.rbp-var.biols.ac.cn/">http://www.rbp-var.biols.ac.cn/</a>, which provides annotation of functional variants involved in post-transcriptional interaction and regulation. </p>
<p class="readmore"><a href="https://academic.oup.com/nar/article/44/D1/D154/2503099/RBP-Var-a-database-of-functional-variants-involved?searchresult=1s">More Reading »</a></p>
</div>
</div>
<!-- ####################################################################################################### -->
<!-- ####################################################################################################### -->
</div>
</div>
</div>
<!-- ####################################################################################################### -->
<div class="wrapper row3">
<div class="rnd">
<div id="container" class="clear">
<!-- ####################################################################################################### -->
<div id="homepage" class="clear">
<!-- ####################################################################################################### -->
<div id="academiclinks" class="clear">
<h2>Epigenetic Data Browsers and Repositories</h2>
<div class="linkbox">
<ul>
<li><a href="http://bigd.big.ac.cn/methbank">» Methbank</a></li>
<li><a href="http://epigenomesportal.ca/ihec/">» IHEC Data Portal</a></li>
<li><a href="http://egg2.wustl.edu/roadmap/web_portal/">» ROADMAP Epigenomics</a></li>
<li><a href="http://www.epigenomes.ca/data-release/">» CEEHRC Platform</a></li>
<li><a href="http://deepblue.mpi-inf.mpg.de/">» DeepBlue</a></li>
<li><a href="http://www.epigenomebrowser.org/">» Epigenome Browser</a></li>
<li><a href="http://epigenomegateway.wustl.edu/browser/">» WashU Epigenome Browser</a></li>
<li><a href="http://uswest.ensembl.org/info/website/tutorials/encode.html">» Ensembl</a></li>
<li><a href="http://gralggen.lsi.upc.edu/recerca/genexp/">» GenExp</a></li>
<li><a href="http://www.genboree.org/epigenomeatlas/index.rhtml">» The Epigenome Atlas</a></li>
<li><a href="http://4dgenome.research.chop.edu">» 4DGenome</a></li>
<li><a href="http://3cdb.big.ac.cn">» 3CDB</a></li>
</ul>
</div>
<div class="linkbox">
<ul>
<li><a href="http://www.neuroepigenomics.org/methylomedb/" target="_blank" rel="noopener noreferrer">» MethylomeDB</a></li>
<li><a href="http://202.97.205.78/diseasemeth/" target="_blank" rel="noopener noreferrer">» DiseaseMeth</a></li>
<li><a href="http://bioinfo.life.hust.edu.cn/lncRNASNP/">» lncRNASNP</a></li>
<li><a href="http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/">» miRWalk 2.0</a></li>
<li><a href="https://cm.jefferson.edu/rna22v2/">» RNA22v2</a></li>
<li><a href="http://www.mirbase.org/" target="_blank" rel="noopener noreferrer">» miRBase</a></li>
<li><a href="http://diana.imis.athena-innovation.gr/DianaTools/index.php">» DIANA Tools</a></li>
<li><a href="http://www.targetscan.org/">» TargetScan</a></li>
<li><a href="http://www.actrec.gov.in/histome/index.php" target="_blank" rel="noopener noreferrer">» Histome</a></li>
<li><a href="http://www.rbp-var.biols.ac.cn/">» RBP-Var</a></li>
<li><a href="http://POSTAR.ncrnalab.org">» POSTAR</a></li>
<li><a href="http://lulab.life.tsinghua.edu.cn/clipdb/">» CLIPdb</a></li>
</ul>
</div>
<div class="linkbox">
<ul>
<li><a href="http://bioconductor.org/packages/release/bioc/html/bsseq.html">» Bsseq</a></li>
<li><a href="https://github.com/thomasvangurp/epiGbs">» epiGbs</a></li>
<li><a href="http://liulab.dfci.harvard.edu/MACS/">» MACS</a></li>
<li><a href="http://home.gwu.edu/~wpeng/Software.htm">» SICER</a></li>
<li><a href="http://wanglab.ucsd.edu/star/epigram/">» Epigram:</a>
<li><a href="http://homer.salk.edu/homer/motif/">» Homer</a></li>
<li><a href="http://meme-suite.org" target="_blank" rel="noopener noreferrer">» The MEME Suite:</a></li>
<li><a href="http://dire.dcode.org/" target="_blank" rel="noopener noreferrer">» DiRE</a></li>
<li><a href="https://biowardrobe.com">» BioWardrobe</a></li>
<li><a href="http://galaxyproject.org/" target="_blank" rel="noopener noreferrer">» Galaxy</a></li>
<li><a href="http://przemol.github.io/seqplots/">» SeqPlots</a></li>
<li><a href="http://deeptools.readthedocs.io/en/latest/index.html">» deeptools</a></li>
</ul>
</div>
<div class="linkbox last">
<ul>
<li><a href="http://amp.pharm.mssm.edu/Enrichr/">» Enrichr</a></li>
<li><a href="http://cpdb.molgen.mpg.de/CPDB">» ConsensusPathwayDB</a></li>
<li><a href="http://bejerano.stanford.edu/great/public/html/">» GREAT</a></li>
<li><a href="http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/#abst">» WGCNA</a></li>
<li><a href="https://toppgene.cchmc.org">» ToppGene</a></li>
<li><a href="https://endeavour.esat.kuleuven.be/">» Endeavour</a></li>
<li><a href="http://www.webgestalt.org/option.php">» WebGestalt</a></li>
<li><a href="http://string-db.org">» STRING</a></li>
<li><a href="http://www.genemania.org">» GeneMANIA</a></li>
<li><a href="http://bisearch.enzim.hu/" target="_blank" rel="noopener noreferrer">» BiSearch</a></li>
<li><a href="http://www.urogene.org/methprimer" target="_blank" rel="noopener noreferrer">» MethPrimer</a></li>
<li><a href="http://www.zymoresearch.com/tools/bisulfite-primer-seeker">» Bisulfite Primer Seeker</a></li>
</ul>
</div>
</div>
<!-- ####################################################################################################### -->
</div>
<p class="readmore"><a href="pages/gallery.html"><b>Click Here To View More Links »</b></a></p>
</div>
</div>
</div>
<!-- ####################################################################################################### -->
<div class="wrapper">
<div id="copyright" class="clear">
<p class="fl_left">Copyright © 2017 - All Rights Reserved<a href="#"></a></p>
<p class="fl_right">Designed by <a target="_blank" href="http://www.os-templates.com/" title="Free Website Templates">eMED</a></p>
</div>
</div>
</body>
</html>