Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Gene & Module Selection #7

Open
dwaggott opened this issue Jan 30, 2015 · 0 comments
Open

Gene & Module Selection #7

dwaggott opened this issue Jan 30, 2015 · 0 comments

Comments

@dwaggott
Copy link

A few more questions if you don't mind:

  1. Do you have any recommendations for gene choice? Should I include all genes or a subset that are significant by some threshold?
  2. How many genes per sample? Does it matter?
  3. How many samples? Is there a lower or upper bound?
  4. How is the heat map constructed? What does each cell represent and how is the clustering done?
  5. What is the origin of the included modules?
  6. What should custom modules look like? (# of modules, number of genes covered, size of modules, connectivity etc.)

Happy if you refer me to relevant material. I may of missed these items. I've got lot's of relevant input and am trying to follow best practices.

Daryl
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@dwaggott