Merge branch 'modernize'

.github/workflows/coverage.yml

@@ -11,12 +11,12 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v2
       with:
-        python-version: "3.10"
+        python-version: "3.12"
     - uses: actions/cache@v2
       name: Configure pip caching
       with:
         path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }}
         restore-keys: |
           ${{ runner.os }}-pip-
     - name: Install Python dependencies

.github/workflows/publish-to-pypi.yml

@@ -0,0 +1,92 @@
+name: Publish 📦 to PyPI
+on: push
+
+jobs:
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.x"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python 🐍 distribution 📦 to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/linkpred
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution 📦 to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+
+  github-release:
+    name: >-
+      Sign the Python 🐍 distribution 📦 with Sigstore
+      and upload them to GitHub Release
+    needs:
+    - publish-to-pypi
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: write  # IMPORTANT: mandatory for making GitHub Releases
+      id-token: write  # IMPORTANT: mandatory for sigstore
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Sign the dists with Sigstore
+      uses: sigstore/gh-action-sigstore-python@v1.2.3
+      with:
+        inputs: >-
+          ./dist/*.tar.gz
+          ./dist/*.whl
+    - name: Create GitHub Release
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      run: >-
+        gh release create
+        '${{ github.ref_name }}'
+        --repo '${{ github.repository }}'
+        --notes ""
+    - name: Upload artifact signatures to GitHub Release
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      # Upload to GitHub Release using the `gh` CLI.
+      # `dist/` contains the built packages, and the
+      # sigstore-produced signatures and certificates.
+      run: >-
+        gh release upload
+        '${{ github.ref_name }}' dist/**
+        --repo '${{ github.repository }}'

.github/workflows/tox.yml

@@ -3,12 +3,12 @@ name: Test with tox
 on: [push]
 
 jobs:
-  build:
+  test:
     runs-on: ubuntu-latest
     strategy:
       max-parallel: 5
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
 
     steps:
     - uses: actions/checkout@v2
@@ -20,7 +20,7 @@ jobs:
       name: Configure pip caching
       with:
         path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }}
         restore-keys: |
           ${{ runner.os }}-pip-
     - name: Install dependencies

README.rst

@@ -17,7 +17,7 @@ While some predictors are fairly straightforward (e.g., if two people have a lar
 Installation
 ------------
 
-**linkpred** (v0.6 and later) works under Python 3.8 to 3.11.
+**linkpred** (v0.6 and later) works under Python 3.8 to 3.12.
 It depends on:
 
 - matplotlib

pyproject.toml

@@ -15,6 +15,7 @@ classifiers = [
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
         "Topic :: Software Development",
         "Topic :: Scientific/Engineering",
         "Development Status :: 4 - Beta",

tox.ini

@@ -4,7 +4,7 @@
 # and then run "tox" from this directory.
 
 [tox]
-envlist = py36,py37,py38,py39,py310
+envlist = py38,py39,py310,py311,py312
 
 [testenv]
 deps =