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Bibliography issue jupyter/nbconvert#768 https://github.com/jupyter/nbconvert-examples/tree/master/citations See if bibliographies work using old tutorial and example linked above.
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Look at Jupiter markdown https://github.com/jupyter/jupyter_markdown
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Read architecture of nbconvert: https://nbconvert.readthedocs.io/en/latest/architecture.html
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Figure out what is confusing to me about the current templating system not just within templates, but how the templates are used elsewhere
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Read about Jinja
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explore markdown and python templates