.pre-commit-config.yaml

# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
fail_fast: false
exclude: '^README.rst$|^tests/|^setup.py$|^examples/'
repos:
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: 5df1a4bf6f04a1ed3a643167b38d502575e29aef
    hooks:
    -   id: trailing-whitespace
    -   id: end-of-file-fixer
    -   id: check-yaml
    -   id: check-added-large-files
-   repo: local
    hooks:
    -   id: versionchecker
        name: Check version agreement in pyproject and __version__
        entry: bash -c
        language: system
        args:
            - get_ver() { echo $(egrep "^__version|^version" $1 | cut -d= -f2 | sed 's/\"\| //g'); };
              v1=`get_ver pyproject.toml`;
              v2=`get_ver vcfstats/__init__.py`;
              if [[ $v1 == $v2 ]]; then exit 0; else exit 1; fi
        pass_filenames: false
        files: ^pyproject\.toml|vcfstats/__init__\.py$
    -   id: flake8
        name: Run flake8
        entry: flake8
        language: system
        args: [vcfstats]
        pass_filenames: false
        files: ^vcfstats/.+$
    -   id: pytest
        name: Run pytest
        entry: pytest
        language: system
        args: [tests/]
        pass_filenames: false
        files: ^tests/.+$|^vcfstats/.+$