Please update: 2021_PattersonNature

[TCLamnidis]

Which package needs changes?

Package name: 2021_PattersonNature

Check for upcoming changes

I confirm there are no changes already suggested for this package that address
my issue in:

• Open Pull Requests
• Open Issues

What needs changing, and why?

The SSF for the package does not end in a new line, which skipped some of the data when processing.

(optional) What are the changes you'd like?

Add an new line at the SSF EOF, and recreate recipe.

(optional) How did you realise something needs updating?

The eager TSV was missing the last entry.

[TCLamnidis]

36 SSF entries are missing a FastQ file for nuclear data. This is likely an issue with the data upload to the ENA, as uploaded BAMs should be converted to FastQs automatically.
May be worthwhile to contact Shop about this.

[TCLamnidis]

Processing update: Issues with automatic fill-in of information to the package janno. Need to manually look through it and understand where the issue arises.

Some individuals have 0-2 SNPs covered on the autosomes. Likely caused by the missing nuclear FastQs mentioned above.