From 80a0c51078eebd9ec438fa8b22cbaf14326d7d23 Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Mon, 6 Apr 2020 12:58:25 -0400
Subject: [PATCH] DOCKER: Set crashfile format to text in Docker images

---
 .neurodocker.json | 2 +-
 Dockerfile        | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.neurodocker.json b/.neurodocker.json
index 2905abf6..c474781e 100644
--- a/.neurodocker.json
+++ b/.neurodocker.json
@@ -83,7 +83,7 @@
     ],
     [
       "run",
-      "echo \"$VERSION\" > /src/fitlins/VERSION"
+      "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt/' /src/fitlins/fitlins/data/nipype.cfg"
     ],
     [
       "miniconda",
diff --git a/Dockerfile b/Dockerfile
index 7d732c79..8f1d79cb 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,6 +1,6 @@
 # Your version: 0.6.0+5.g74cb187.dirty Latest version: 0.6.0
 # Generated by Neurodocker version 0.6.0+5.g74cb187.dirty
-# Timestamp: 2020-03-30 19:14:46 UTC
+# Timestamp: 2020-04-06 17:56:55 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -97,7 +97,7 @@ USER neuro
 
 ARG VERSION
 
-RUN echo "$VERSION" > /src/fitlins/VERSION
+RUN echo "$VERSION" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt/' /src/fitlins/fitlins/data/nipype.cfg
 
 RUN bash -c "source activate neuro \
     &&   pip install --no-cache-dir -r \
@@ -208,7 +208,7 @@ RUN echo '{ \
     \n    ], \
     \n    [ \
     \n      "run", \
-    \n      "echo \"$VERSION\" > /src/fitlins/VERSION" \
+    \n      "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e '"'"'s/crashfile_format = pklz/crashfile_format = txt/'"'"' /src/fitlins/fitlins/data/nipype.cfg" \
     \n    ], \
     \n    [ \
     \n      "miniconda", \