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paper.json
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{
"@context": "http://www.phyloref.org/phyx.js/context/v0.1.0/phyx.json",
"doi": "10.1146/annurev.earth.31.100901.141308",
"url": "https://www.annualreviews.org/doi/10.1146/annurev.earth.31.100901.141308",
"citation": "Brochu (2003) Annual Review of Earth and Planetary Sciences 31:357-397",
"phylogenies": [
{
"description": "Fig 1 from the paper",
"newick": "(Parasuchia,(rauisuchians,Aetosauria,(sphenosuchians,(protosuchians,(mesosuchians,(Hylaeochampsa,Aegyptosuchus,Stomatosuchus,(Allodaposuchus,('Gavialis gangeticus',(('Diplocynodon ratelii',('Alligator mississippiensis','Caiman crocodilus')Alligatoridae)Alligatoroidea,('Tomistoma schlegelii',('Osteolaemus tetraspis','Crocodylus niloticus')Crocodylinae)Crocodylidae)Brevirostres)Crocodylia))Eusuchia)Mesoeucrocodylia)Crocodyliformes)Crocodylomorpha))root;",
"additionalNodeProperties": {
"Gavialis gangeticus": {
"expectedPhyloreferenceNamed": [
"Gavialoidea"
]
},
"Diplocynodon ratelii": {
"expectedPhyloreferenceNamed": [
"Diplocynodontinae"
]
},
"Tomistoma schlegelii": {
"expectedPhyloreferenceNamed": [
"Tomistominae"
]
},
"Alligatoridae": {
"expectedPhyloreferenceNamed": [
"Globidonta"
]
},
"Alligator mississippiensis": {
"expectedPhyloreferenceNamed": [
"Alligatorinae"
]
},
"Caiman crocodilus": {
"expectedPhyloreferenceNamed": [
"Caimaninae"
]
},
"Crocodylidae": {
"expectedPhyloreferenceNamed": [
"Crocodyloidea"
]
},
"Osteolaemus tetraspis": {
"expectedPhyloreferenceNamed": [
"Osteolaeminae"
]
}
}
}
],
"phylorefs": [
{
"label": "Eusuchia",
"cladeDefinition": "Eusuchia (Huxley 1875). Amended definition.\n\nLast common ancestor of Hylaeochampsa vectiana, Crocodylus niloticus, Gavialis gangeticus, and Alligator mississippiensis\t and all of its descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Hylaeochampsa vectiana"
}
]
}
],
"specifierWillNotMatch": "Not present in figure 1"
}
],
"externalSpecifiers": [],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:46:23.547Z"
}
}
]
},
{
"label": "Crocodylia",
"cladeDefinition": "Crocodylia (Gmelin 1789). Amended definition.\n\nLast common ancestor of Gavialis gangeticus, Alligator mississippiensis, and Crocodylus niloticus and all of its\t descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
}
],
"externalSpecifiers": [],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:46:33.179Z"
}
}
]
},
{
"label": "Gavialoidea",
"cladeDefinition": "Gavialoidea (Case 1930).\n\nGavialis gangeticus and all crocodylians closer to it than to Alligator mississippiensis or Crocodylus niloticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:under-review"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:48:48.903Z"
}
}
]
},
{
"label": "Pristichampsinae",
"cladeDefinition": "Pristichampsinae (Kuhn 1968)\t. New definition.\n\nPristichampsus rollinati and all crocodylians closer to it than to Gavialis gangeticus, Alligator mississippiensis, or Crocodylus niloticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Pristichampsus rollinati"
}
]
}
],
"specifierWillNotMatch": "Not included in figure 1"
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"curatorComments": "Not included in figure 1.",
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:48:53.135Z"
}
}
]
},
{
"label": "Brevirostres",
"cladeDefinition": "Brevirostres (von Zittel 1890). If Gavialis and Tomistoma are sister taxa, Brevirostres is a junior synonym of Crocodylia.\n\nLast common ancestor of Alligator mississippiensis and Crocodylus niloticus and all of its descendents.\n \t \t ",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"externalSpecifiers": [],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:04.648Z"
}
}
]
},
{
"label": "Alligatoroidea",
"cladeDefinition": "Alligatoroidea (Gray 1844). \n\nAlligator mississippiensis and all crocodylians closer to it than to Crocodylus niloticus or Gavialis gangeticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T20:00:47.151Z"
},
"statusCURIE": "pso:final-draft",
"intervalStart": "2018-06-11T20:00:47.151Z"
}
]
},
{
"label": "Diplocynodontinae",
"cladeDefinition": "Diplocynodontinae (Brochu 1999).\n\nDiplocynodon ratelii and all crocodylians closer to it than to Alligator mississippiensis.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Diplocynodon ratelii"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:22.452Z"
}
}
]
},
{
"label": "Globidonta",
"cladeDefinition": "Globidonta (Brochu 1999).\n\nAlligator mississippiensis and all crocodylians closer to it than to Diplocynodon ratelii.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Diplocynodon ratelii"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:26.424Z"
}
}
]
},
{
"label": "Alligatoridae",
"cladeDefinition": "Alligatoridae (Cuvier 1807).\n\nLast common ancestor of Alligator mississippiensis and Caiman crocodilus and all of its descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Caiman crocodilus"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"externalSpecifiers": [],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:31.471Z"
}
}
]
},
{
"label": "Alligatorinae",
"cladeDefinition": "Alligatorinae (Kälin 1940).\n\nAlligator mississippiensis and all crocodylians closer to it than to Caiman crocodilus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Caiman crocodilus"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:36.063Z"
}
}
]
},
{
"label": "Caimaninae",
"cladeDefinition": "Caimaninae (Norell 1988).\n\nCaiman crocodilus and all crocodylians closer to it than to Alligator mississippiensis.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Caiman crocodilus"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:42.007Z"
}
}
]
},
{
"label": "Crocodyloidea",
"cladeDefinition": "Crocodyloidea (Fitzinger 1826).\n\nCrocodylus niloticus and all crocodylians closer to it than to Alligator mississippiensis or Gavialis gangeticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Alligator mississippiensis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Gavialis gangeticus"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:under-review"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:48.240Z"
}
}
]
},
{
"label": "Crocodylidae",
"cladeDefinition": "Crocodylidae (Cuvier 1807). Definition dependent on phylogenetic context.\n\nLast common ancestor of Crocodylus niloticus, Osteolaemus tetraspis, and Tomistoma schlegelii and all of its descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Tomistoma schlegelii"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Osteolaemus tetraspis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"externalSpecifiers": [],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:51.960Z"
}
}
]
},
{
"label": "Mekosuchinae",
"cladeDefinition": "Mekosuchinae (Balouet & Buffetaut 1987). Definition adapted from Salisbury & Willis 1996.\n\nLast common ancestor of Kambara murgonensis, Australosuchus clarkae, Pallimnarchus pollens, Baru darrowi, Trilophosuchus rackhami, Quinkana\t fortirostrum, and Mekosuchus inexpectatus and all of its descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Mekosuchus inexpectatus"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Quinkana fortirostrum"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Trilophosuchus rackhami"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Baru darrowi"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Pallimnarchus pollens"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Australosuchus clarkae"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Kambara murgonensis"
}
]
}
],
"specifierWillNotMatch": "Not illustrated in fig 1"
}
],
"externalSpecifiers": [],
"curatorComments": "Not illustrated in fig 1",
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:49:57.400Z"
}
}
]
},
{
"label": "Tomistominae",
"cladeDefinition": "Tomistominae (Kälin 1955). Definition dependent on phylogenetic context.\n\nTomistoma schlegelii and all crocodylians closer to it than to Crocodylus niloticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Tomistoma schlegelii"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:50:16.649Z"
}
}
]
},
{
"label": "Crocodylinae",
"cladeDefinition": "Crocodylinae (Cuvier 1807). Definition dependent on phylogenetic context.\n\nCrocodylus niloticus and all crocodylians closer to it than to Tomistoma schlegelii.\n \t \t ",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Tomistoma schlegelii"
}
]
}
]
}
],
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:50:26.448Z"
}
}
]
},
{
"label": "Osteolaeminae",
"cladeDefinition": "Osteolaeminae tax. nov. New definition.\n\nOsteolaemus tetraspis and all crocodylians closer to it than to Crocodylus niloticus.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Osteolaemus tetraspis"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"curatorComments": "Not illustrated in fig 1, but it's resolution is pretty unambiguous, so I'm going to assert that it should resolve to \"Osteolaemus tetraspis\"",
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:submitted"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T21:47:47.495Z"
}
}
]
},
{
"label": "Crocodylidae (alt)",
"cladeDefinition": "Crocodylidae (Cuvier 1807).\n\nLast common ancestor of Crocodylus niloticus and Osteolaemus tetraspis and all of its descendents.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Osteolaemus tetraspis"
}
]
}
]
},
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"externalSpecifiers": [],
"curatorComments": "Not illustrated on fig 1.",
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:50:46.938Z"
}
}
]
},
{
"label": "Crocodylinae (alt)",
"cladeDefinition": "Crocodylinae (Cuvier 1807). At present, this would be redundant with Crocodylus.\n\nCrocodylus niloticus and all crocodylians closer to it than to Osteolaemus tetraspis.",
"internalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Crocodylus niloticus"
}
]
}
]
}
],
"externalSpecifiers": [
{
"referencesTaxonomicUnits": [
{
"scientificNames": [
{
"scientificName": "Osteolaemus tetraspis"
}
]
}
]
}
],
"curatorComments": "Not illustrated in fig 1.",
"pso:holdsStatusInTime": [
{
"@type": "http://purl.org/spar/pso/StatusInTime",
"pso:withStatus": {
"@id": "pso:final-draft"
},
"tvc:atTime": {
"timeinterval:hasIntervalStartDate": "2018-06-11T22:50:53.131Z"
}
}
]
},
{
"label": "Gavialidae (alt)",
"cladeDefinition": "Gavialidae (Adams 1854). In a morphological context, Gavialidae would be redundant with Gavialis gangeticus.\n\nLast common ancestor of Gavialis gangeticus and Tomistoma schlegelii and all of its descendents.",
"internalSpecifiers": [