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Enhancement: Don't fix threads to 1? #104

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schorlton opened this issue Mar 15, 2022 · 1 comment
Closed

Enhancement: Don't fix threads to 1? #104

schorlton opened this issue Mar 15, 2022 · 1 comment

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@schorlton
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Hi,

Thanks again for your support of MOB-Suite! It seems like threads are fixed to 1 for a bunch of functions in mob_recon.py...I'm wondering if there's a reason for this? We're hitting speed limitations of tblastn on large metagenomic assemblies. I'd even be happy to open a PR to set them to num_threads if it makes sense. Thanks!

Sam

@jrober84
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v. 3.1.0 removes this limitation of threads to 1. Older versions of tblastn had issues with higher thread counts but this isn't a problem anymore.

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