diff --git a/tools/filter_spades_repeats/.shed.yml b/tools/filter_spades_repeats/.shed.yml index eb043582..94c49c42 100644 --- a/tools/filter_spades_repeats/.shed.yml +++ b/tools/filter_spades_repeats/.shed.yml @@ -3,5 +3,5 @@ description: Remove short and repeat contigs/scaffolds name: filter_spades_repeats owner: nml long_description: Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a calculated coverage. Repeated contigs are detected based on coverage. -remote_repository_url: https://github.com/phac-nml/galaxy_tools/ +remote_repository_url: https://github.com/phac-nml/galaxy_tools/tree/master/tools/filter_spades_repeats homepage_url: https://github.com/phac-nml/galaxy_tools/ diff --git a/tools/filter_spades_repeats/filter_spades_repeats.xml b/tools/filter_spades_repeats/filter_spades_repeats.xml index 48802f09..f9bcc519 100644 --- a/tools/filter_spades_repeats/filter_spades_repeats.xml +++ b/tools/filter_spades_repeats/filter_spades_repeats.xml @@ -1,5 +1,8 @@ Remove short and repeat contigs/scaffolds + + filter_spades_repeats + perl-bioperl