From 2160c2e6b122818e7e70a569f4d815306f56aeb4 Mon Sep 17 00:00:00 2001 From: Alfredo Lucas Date: Mon, 22 Jan 2024 00:33:54 -0500 Subject: [PATCH] Update Windows_Installation_Instructions.md --- .../docs/Windows_Installation_Instructions.md | 20 ++++++++++++------- 1 file changed, 13 insertions(+), 7 deletions(-) diff --git a/python/docs/Windows_Installation_Instructions.md b/python/docs/Windows_Installation_Instructions.md index 87abfcb..2ebb016 100644 --- a/python/docs/Windows_Installation_Instructions.md +++ b/python/docs/Windows_Installation_Instructions.md @@ -1,3 +1,7 @@ +# Installing Docker + +Please install docker following the instructions found [here](https://github.com/penn-cnt/ieeg-recon/blob/main/python/docs/Docker_Installation.md) + # Installing Miniconda You need to have Miniconda installed on your system. Follow the instructions below based on your operating system. @@ -6,7 +10,9 @@ You need to have Miniconda installed on your system. Follow the instructions bel 2. Run the installer and follow the on-screen instructions. 3. After installation, use the Anaconda Prompt for the following commands. -## Installing Git: +**Note about WSL:** I have tried WSL, and the Anaconda Prompt approach descibed above is a better option. If you get WSL working with this approach, let me know! + +# Installing Git: Install git by typing: @@ -14,7 +20,7 @@ Install git by typing: conda install git ``` -## Clone the repository +# Clone the repository Clone this repository by doing: @@ -22,19 +28,19 @@ Clone this repository by doing: git clone https://github.com/penn-cnt/ieeg-recon.git ``` -## Install the GUI: +# Install the GUI: After cloning, install the GUI by running: ``` -bash ieeg-recon/python/install_ieeg-recon_gui_linux.sh +bash ieeg-recon/python/install_ieeg-recon_gui_windows.sh ``` -## Install VoxTool +# Install VoxTool Due to differences in package dependencies, the Windows version of iEEG-recon requires a step-by-step installation of VoxTool. It can easily be done by following the instructions [here](https://github.com/penn-cnt/ieeg-recon/blob/main/python/docs/Manual_Voxtool_Installation.md) -## Running iEEG-recon +# Running iEEG-recon After all the steps above are completed, activate the `ieeg_recon` environment: @@ -46,5 +52,5 @@ Then run the GUI by typing: ``` -python ieeg-recon/python/ieeg_recon_gui_docker.py +python ieeg-recon/python/ieeg_recon_gui_docker_windows.py ```