README.md

MONAI Template

MONAI template for training of medical deep learning, modified from our pure Pytorch Template.

TODO

• copy from Pytorch Template and modify Dataloader
• modify trainer.py to MONAI-based implementation
• usage example

Getting Started

1. Create conda environment, python>=3.10

conda create -n pytorch python=3.10

2. Install PyTorch, see more in PyTorch - Get Started

conda install pytorch==1.13.1 torchvision==0.14.1 pytorch-cuda=11.6 -c pytorch -c nvidia

3. Install MONAI, see more in MONAI - Installation Guide

pip install monai==1.3.0

3. Install requirements

pip install -r requirements.txt

# Optional
pip install -r requirements_optional.txt

Thanks

• Swin-UNETR
• Project-MONAI/tutorials