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generate_html.R
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generate_html.R
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html_text <- function(TemplateTR, TemplateEN, stain, dzi_info) {
html_string <- '<html> <!-- do not use <!DOCTYPE html> -->
<head>
<title>{{TemplateEN}} {{TemplateTR}}</title>
<meta name="keywords" content="{{TemplateEN}}, {{TemplateTR}}, patoloji, atlas, pathology, whole slide image, virtual microscopy, virtual microscope, sanal mikroskop">
<meta name="description" content="{{TemplateEN}} {{TemplateTR}}">
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="apple-touch-icon" sizes="180x180" href="https://images.patolojiatlasi.com/img/apple-touch-icon.png">
<link rel="icon" type="image/png" sizes="32x32" href="https://images.patolojiatlasi.com/img/favicon-32x32.png">
<link rel="icon" type="image/png" sizes="16x16" href="https://images.patolojiatlasi.com/img/favicon-16x16.png">
<link rel="manifest" href="https://images.patolojiatlasi.com/img/site.webmanifest">
<link rel="icon" href="https://images.patolojiatlasi.com/img/favicon.ico" type="image/x-icon" />
<script src="https://images.patolojiatlasi.com/openseadragon/openseadragon.min.js"></script>
<script src="./openseadragon/openseadragon.min.js"></script>
<!-- <script src="openseadragon/openseadragon-scalebar.js"></script> -->
</head>
<body>
<div>
<label for="rotation-slider">Rotate Image:</label>
<input type="range" id="rotation-slider" min="0" max="360" value="0">
</div>
<div id="openseadragon1" style="width: 100%; height: 95%;"></div>
<script type="text/javascript">
var viewer = OpenSeadragon({
id: "openseadragon1",
prefixUrl: "./openseadragon/images/",
showHomeControl: false,
showRotationControl: true,
showNavigator: true,
showFlipControl: true,
navigatorBackground: "rgb(240, 240, 240)",
tileSources: {
Image: {
Url: "./{{stain}}_files/",
TileSize: "254",
Overlap: "1",
Format: "jpeg",
ServerFormat: "Default",
xmlns: "http://schemas.microsoft.com/deepzoom/2008",
Size: {
Width: "{{width}}",
Height: "{{height}}"
}
}
}
// ,
// tileSources: "yourwsi.dzi",
// sequenceMode: false,
// autoHideControls: true,
// animationTime: 1.0,
// blendTime: 0.6,
// constrainDuringPan: true,
// maxZoomPixelRatio: 1,
// visibilityRatio: 1,
// zoomPerScrolli: 1,
// defaultZoomLevel: 1,
// showReferenceStrip: true,
// showNavigator: true,
// showFullPageControl: false
});
/* viewer.scalebar({
minWidth: "100px",
pixelsPerMeter: "1.98255e+06",
fontFamily: "Arial",
backgroundColor: "rgba(255, 255, 255, 0.5)",
fontSize: "small",
barThickness: "2",
xOffset: "10",
yOffset: "10"
}); */
// Add a keydown event listener to the document
document.addEventListener("keydown", function (event) {
switch (event.keyCode) {
case 90: // "Z" key for zoom in
viewer.viewport.zoomBy(1.2);
viewer.viewport.applyConstraints();
break;
case 88: // "X" key for zoom out
viewer.viewport.zoomBy(0.8);
viewer.viewport.applyConstraints();
break;
case 37: // Left arrow key
case 65: // "A" key
viewer.viewport.panBy(new OpenSeadragon.Point(-0.05, 0));
viewer.viewport.applyConstraints();
break;
case 38: // Up arrow key
case 87: // "W" key
viewer.viewport.panBy(new OpenSeadragon.Point(0, -0.05));
viewer.viewport.applyConstraints();
break;
case 39: // Right arrow key
case 68: // "D" key
viewer.viewport.panBy(new OpenSeadragon.Point(0.05, 0));
viewer.viewport.applyConstraints();
break;
case 40: // Down arrow key
case 83: // "S" key
viewer.viewport.panBy(new OpenSeadragon.Point(0, 0.05));
viewer.viewport.applyConstraints();
break;
}
});
document.getElementById("rotation-slider").addEventListener("input", function (event) {
var rotationAngle = event.target.value;
viewer.viewport.setRotation(parseFloat(rotationAngle));
});
</script>
</body>
</html>
'
html_text_list <- list()
for (s in trimws(stain)) {
data <- list(
TemplateTR = TemplateTR,
TemplateEN = TemplateEN,
stain = s,
width = dzi_info[[s]]$width,
height = dzi_info[[s]]$height
)
text <- whisker::whisker.render(html_string, data)
html_text_list[[s]] <- text
}
return(html_text_list)
}