-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path.gitignore
135 lines (102 loc) · 1.67 KB
/
.gitignore
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
# OS generated file
.DS_Store
# BioMASS ---
# figs
figure/
# fit_param
out/
!/training/erbb_network_jl/dat2npy/out/
# patient-specific models
TCGA_*
!/models/colon/TCGA_4T_AA8H_01A
# sensitivity array
sensitivity_coefficients/
# simulation data
simulation_data/
# optimization results
optimization_results/
# training
errout/
# transcriptomic data
transcriptomic_data/*.csv
!/transcriptomic_data/TPM_RLE_postComBat_COAD_BREAST.csv
GDCdata
*.rda
# patient classification
classification/*.csv
subtype_classification.pdf
# drug response analysis
dose_response/
activity_area/
# Python ---
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# Unit test / coverage reports
.cache
.pytest_cache/
# Translations
*.mo
*.pot
# PyBuilder
.pybuilder/
target/
# Jupyter Notebook
*.ipynb
.ipynb_checkpoints
# IPython
profile_default/
ipython_config.py
# R ---
# History files
.Rhistory
.Rapp.history
# Session Data files
.RData
# User-specific files
.Ruserdata
# Example code in package build process
*-Ex.R
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# RStudio files
.Rproj.user/
# produced vignettes
vignettes/*.html
vignettes/*.pdf
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# knitr and R markdown default cache directories
*_cache/
/cache/
# Temporary files created by R markdown
*.utf8.md
*.knit.md
# R Environment Variables
.Renviron
# translation temp files
po/*~