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<!DOCTYPE html>
<html lang="en-US">
<head>
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="keywords" content="data scientist, computational biology, systems biology, bioinformatics, metabolomics, lipidomics, metabolic modeling, pathways, NGS, human metabolism, gut microbiome ">
<title> Partho Sen's Web-profile : Hi There! </title>
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<style type="text/css">
[data-aos] {
opacity: 1 !important;
transform: translate(0) scale(1) !important;
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</style>
</noscript>
</head>
<body class="bg-light" id="top">
<header class="d-print-none">
<div class="container text-center text-lg-left">
<div class="site-nav">
<nav role="navigation">
<ul class="nav justify-content-center">
<li class="nav-item"><a class="nav-link" href="https://parthosen.github.io" title="Home"><span class="menu-title"> Home </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#about" title="About"><span class="menu-title"> About me </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#skills" title="Skills"><span class="menu-title"> Skills </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#experience" title="Experience"><span class="menu-title"> Experience </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#education" title="Education"><span class="menu-title"> Education </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#publications" title="Publications"><span class="menu-title"> Publications </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#conferences" title="Conferences"><span class="menu-title"> Conferences </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#editorials" title="Editorials"><span class="menu-title"> Editorials </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#achievements" title="Achievements"><span class="menu-title"> Achievements </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#news" title="News"><span class="menu-title"> News </span></a>
</li>
<li class="nav-item"><a class="nav-link" href="#contact" title="Contact"><span class="menu-title"> Contact </span></a>
</li>
</ul>
</nav>
</div>
</div>
</header>
<div class="page-content">
<div class="container">
<div class="resume-container">
<div class="shadow-1-strong bg-white my-5" id="intro">
<div class="bg-info text-white">
<div class="cover bg-image"><img src="images/header-background.jpg" width="800" height="800">
<div class="mask" style="backdrop-filter: blur(0px);">
<div class="text-center p-6">
<div class="avatar p-1"><br/><img class="img-thumbnail shadow-2-strong" src="images/avatar2.png" width="200" height="200"/></div>
<div class="header-bio mt-3">
<div data-aos="zoom-in" data-aos-delay="0">
<h2 class="h1"> Partho Sen (PhD) </h2>
<p> Data Scientist | Computational Biologist | Adjunct Professor | Precision Medicine </p>
</div>
<div class="header-social mb-3 d-print-none" data-aos="zoom-in" data-aos-delay="200">
<nav role="navigation">
<ul class="nav justify-content-center">
<li class="nav-item"><a class="nav-link" href="https://orcid.org/0000-0003-0475-2763" target="_blank" title="ORCiD"><i class="fab fa-orcid"></i><span class="menu-title sr-only">ORCiD</span></a>
</li>
<li class="nav-item"><a class="nav-link" href="https://www.researchgate.net/profile/Partho-Sen" target="_blank" title="ResearchGate"><i class="fab fa-researchgate"></i><span class="menu-title sr-only">ResearchGate</span></a>
</li>
<li class="nav-item"><a class="nav-link" href="https://twitter.com/partho_phd" target="_blank" title="Twitter"><i class="fab fa-twitter"></i><span class="menu-title sr-only">Twitter</span></a>
</li>
<li class="nav-item"><a class="nav-link" href="https://www.linkedin.com/in/drparthosen/" target="_blank" title="Linkedin"><i class="fab fa-linkedin"></i><span class="menu-title sr-only">Linkedin</span></a>
</li>
<li class="nav-item"><a class="nav-link" href="https://github.com/parthosen" title="Github" target="_blank"><i class="fab fa-github"></i><span class="menu-title sr-only">Github</span></a>
</li>
</ul>
</nav>
</div>
<div class="d-print-none"><a class="btn btn-outline-light btn-lg shadow-sm mt-1 me-3" href="publications/publication_list_updated_on_06062024.pdf" target="_blank" data-aos="fade-right" data-aos-delay="300"> Publications (pdf) </a><a class="btn btn-outline-light btn-lg shadow-sm mt-1" href="#contact" data-aos="fade-left" data-aos-delay="300"> Contact </a></div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="about">
<div class="about-section">
<div class="row">
<div class="col-md-6">
<h2 class="h2 fw-light mb-4"> About me </h2>
<p> I've a 13-year background in computational biology and bioinformatics. My professional / research journey has been marked to unravel the intricacies of biochemical signatures and processes in humans and microbes.</p>
<p> Currently specializing in precision and systems medicine, my focus centers on multiple myeloma and other cancer types. By utilization of multiomics (genomics, transcriptomics, proteomics and metabolomics) and clinical datasets, I tend to delineate cellular signatures and pathways associated with cancer, contributing to the biomarker discovery, and thereby attributing towards the cancer treatment.</p>
<p> My prior research has delved into diverse health conditions, including Diabetes (Type 1 & 2), Non-Alcoholic Fatty Liver Disease (NAFLD), Obesity, and Cardiovascular disease (Atherosclerosis). The overarching objective of my work is to identify molecular markers that serve as key insights into disease mechanisms and underlying pathways. Thereby, aim to formulate innovative drugs, inhibitors, and therapeutic strategies.</p>
<p> In addition to my proficiency in mathematical, statistical modeling and data science, I am an accomplished computer programmer; well-versed in machine learning. My passion lies in harnessing large datasets to design tools and methods that address contemporary challenges in healthcare, as well as cell and tissue biology.</p>
<p> I am confident that with my expertise, we can achieve significant breakthroughs in understanding and treating diseases that have hitherto posed significant challenges.</p>
</div>
<div class="col-md-5 offset-lg-1">
<div class="row mt-2">
<h2 class="h2 fw-light mb-4">Bio</h2>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="far fa-calendar-alt pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Birthday </div>
</div>
<div class="col-sm-7">
<div class="pb-2"> -- </div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="far fa-envelope pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Email </div>
</div>
<div class="col-sm-7">
<div class="pb-2"><a href="mailto:partho.phd@gmail.com"> partho.phd [@] gmail.com </a></div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="fab fa-skype pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Skype IM </div>
</div>
<div class="col-sm-7">
<div class="pb-2"> -- </div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="fab fa-google pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Google Scholar </div>
</div>
<div class="col-sm-7">
<div class="pb-2"><a href="https://scholar.google.com/citations?user=EfY94pAAAAAJ&hl=en" target="_blank"> https://scholar.google.com </a></div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="fab fa-ncbi pe-2 text-muted" style="width:24px;opacity:0.85;"></i> PubMed </div>
</div>
<div class="col-sm-7">
<div class="pb-2"><a href="https://pubmed.ncbi.nlm.nih.gov/?term=Partho+Sen" target="_blank"> https://pubmed.ncbi.nlm.nih.gov </a></div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="fas fa-phone pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Phone</div>
</div>
<div class="col-sm-7">
<div class="pb-2"> -- </div>
</div>
<div class="col-sm-5">
<div class="pb-2 fw-bolder"><i class="fas fa-map-marker-alt pe-2 text-muted" style="width:24px;opacity:0.85;"></i> Address </div>
</div>
<div class="col-sm-7">
<div class="pb-2">
Mayo Clinic,
55902, Rochester, MINNESOTA (MN), USA
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="skills">
<div class="skills-section">
<h2 class="h2 fw-light mb-4"> Programming Skills and Research Techniques </h2>
<div class="row">
<div class="col-md-6">
<div class="mb-3"><span class="fw-bolder"> R </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-info" role="progressbar" data-aos="zoom-in-right" data-aos-delay="100" data-aos-anchor=".skills-section" style="width: 98%;" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> 8 years </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> MATLAB </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-info" role="progressbar" data-aos="zoom-in-right" data-aos-delay="200" data-aos-anchor=".skills-section" style="width: 88%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> 5 years </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> Python </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-info" role="progressbar" data-aos="zoom-in-right" data-aos-delay="300" data-aos-anchor=".skills-section" style="width: 75%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> 2 years </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> HTML and PHP </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-info" role="progressbar" data-aos="zoom-in-right" data-aos-delay="400" data-aos-anchor=".skills-section" style="width: 55%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> 1 year </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> MySQL and PostgreSQL </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-info" role="progressbar" data-aos="zoom-in-right" data-aos-delay="500" data-aos-anchor=".skills-section" style="width: 55%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> 1 year </div>
</div>
</div>
</div>
<div class="col-md-6">
<div class="mb-3"><span class="fw-bolder"> Bioinformatics: Next-Generation Sequencing (NGS) </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-primary" role="progressbar" data-aos="zoom-in-right" data-aos-delay="100" data-aos-anchor=".skills-section" style="width: 98%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> Expert </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> Data science: Biological, Clinical and Multi-Omics data </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-primary" role="progressbar" data-aos="zoom-in-right" data-aos-delay="500" data-aos-anchor=".skills-section" style="width: 95%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> Expert </div>
</div>
<div class="mb-3"><span class="fw-bolder"> Human disease marker/signature discovery & related pathways </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-primary" role="progressbar" data-aos="zoom-in-right" data-aos-delay="200" data-aos-anchor=".skills-section" style="width: 93%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> Expert </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> Biostatistics and Mathematical modeling </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-primary" role="progressbar" data-aos="zoom-in-right" data-aos-delay="300" data-aos-anchor=".skills-section" style="width: 85%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> Advance level </div>
</div>
</div>
<div class="mb-3"><span class="fw-bolder"> Machine Learning </span>
<div class="progress my-2 rounded" style="height: 20px">
<div class="progress-bar bg-primary" role="progressbar" data-aos="zoom-in-right" data-aos-delay="400" data-aos-anchor=".skills-section" style="width: 83%" aria-valuenow="80" aria-valuemin="0" aria-valuemax="100"> Advance level </div>
</div>
</div>
</div>
</div>
<p> * Other soft and analytical skills are included in the CV * </p>
</div>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="experience">
<div class="work-experience-section">
<h2 class="h2 fw-light mb-4"> Research and work experiences </h2>
<div class="timeline">
<div class="timeline-card timeline-card-info" data-aos="fade-in" data-aos-delay="0">
<div class="timeline-head px-4 pt-3">
<div class="h5"> Mayo Clinic, Rochester, Minnesota, USA
<span class="text-muted h6"><br/><a href="https://www.mayoclinic.org/departments-centers/laboratory-medicine-pathology/overview" target="_blank"> Department of Laboratory Medicine and Pathology </a></span>
</div>
</div>
<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> Aug, 2023 - pursuing </div>
<div> Data Science Analyst </div>
</div>
</div>
<div class="timeline-card timeline-card-info" data-aos="fade-in" data-aos-delay="0">
<div class="timeline-head px-4 pt-3">
<div class="h5"> German Heart Centre (Deutschen Herzzentrum München) - Technical University of Munich (TUM), Munich, Germany
<!-- <span class="text-muted h6"><br/><a href="https://www.tum.de/en/" target="_blank"> Technical University of Munich (TUM) </a></span> -->
<span class="text-muted h6"><br/><a href="https://www.deutsches-herzzentrum-muenchen.de/research/3681/" target="_blank"> Molecular Genetics of Atherosclerosis and Heart Attack </a></span>
</div>
</div>
<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> Sep, 2022 - Jul, 2023 </div>
<div> Bioinformatics Scientist </div>
</div>
</div>
<div class="timeline-card timeline-card-info" data-aos="fade-in" data-aos-delay="0">
<div class="timeline-head px-4 pt-3">
<div class="h5"> University of Turku (Turun yliopisto), Turku, Finland
<span class="text-muted h6"><br/><a href="https://www.utu.fi/en/university/faculty-of-technology/life-technologies" target="_blank"> Department of Life Technologies, Faculty of Technology </a></span>
</div>
</div>
<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> Titled on June, 2022 </div>
<div> Adjunct Professor/Docent in Computational Biology </div>
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<div class="h5"> Turku Bioscience - University of Turku, Turku, Finland
<span class="text-muted h6"><br/><a href="https://bioscience.fi/research/systems-medicine/profile/" target="_blank"> Systems Medicine </a></span>
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<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> May, 2017 - Aug, 2022 </div>
<div> Senior postdoctoral researcher </div>
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<div class="h5"> Örebro University, Örebro, Sweden
<span class="text-muted h6"><br/><a href="https://www.oru.se/english/employee/partho_sarathi-sen" target="_blank"> School of Medical Sciences, Systems Medicine </a></span>
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<div class="text-muted text-small mb-3"> Oct, 2019 - Aug, 2022 </div>
<div> Affiliated researcher </div>
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<div class="h5"> Chalmers University of Technology, Gothenburg, Sweden
<span class="text-muted h6"><br/> <a href="https://www.sysbio.se/" target="_blank"> Department of Biology and Biological Engineering </a> </span>
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<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3">April, 2014 - 2017 </div>
<div> Postdoctoral fellow </div>
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<div class="h5"> Jawaharlal Nehru University (JNU), New Delhi, India
<span class="text-muted h6"><br/><a href="https://www.jnu.ac.in/scis" target="_blank"> School of Computational and Integrative Sciences (SCIS) </a></span>
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<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> June, 2009 - June, 2010 </div>
<div> Junior Research Fellow (JRF) </div>
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<div class="shadow-1-strong bg-white my-5 p-5" id="education">
<div class="education-section">
<h2 class="h2 fw-light mb-4">Education</h2>
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<div class="h5"><a href="https://www.umontpellier.fr/en/" target="_blank"> Université of Montpellier 2, Montpellier, France </a>
<span class="text-muted h6"><br/> DIMNP-UMR 5235, Centre National de la recherche scientifique (CNRS) </span></div>
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<div class="text-muted text-small mb-3"> Dec, 2010 - 2013 </div>
<div> Doctor of Philosophy (PhD) in Biological Sciences (Systems Biology/Bioinformatics) </div>
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<div class="h5"><a href="http://www.niperkolkata.edu.in/" target="_blank"> National Institute of Pharmaceutical Education and Research (N.I.P.E.R), Kolkata, India </a></div>
</div>
<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> June, 2007 - 2009</div>
<div> Master of Science in Pharmaceutical Sciences (M.S. Pharm) in Pharmacoinformatics </div>
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<div class="h5"><a href="http://www.rips.ac.in/" target="_blank"> Roland Institute of Pharmaceutical Sciences (RIPS), Berhampur, Odisha, India </a></div>
</div>
<div class="timeline-body px-4 pb-4">
<div class="text-muted text-small mb-3"> April, 2003 - 2007 </div>
<div> Bachelor of Pharmacy (B.Pharm) </div>
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<div class="shadow-1-strong bg-white my-5 p-5" id="publications">
<div class="education-section">
<h2 class="h2 fw-light mb-4"> Publications </h2>
<div>
<div>
<div class="h3"> 2024 </div>
</div>
<ul>
<li>
Andrabi, SBA., Kalim, UU., Palani, S., Khan, MM., Khan, MH., Fagersund, J., Orpana, J., Paulin, N., Batkulwar, K., Junttila, S., Buchacher, T., Grönroos, T., Toikka, L., Ammunet, T., <strong> Sen, P. </strong>, Orešič, M., Kumpulainen, V., Tuomisto, JEE., Sinha, R., Marson, A., Rasool, O., Elo, LL., Lahesmaa, R. Long Noncoding RNA LIRIL2R Modulates FOXP3 Levels and Suppressive Function of Human CD4+ Regulatory T Cells by Regulating IL2RA. <strong> PNAS </strong>, 121(23), e2315363121.
<a href="https://www.pnas.org/doi/10.1073/pnas.2315363121" target="_blank">[html]</a>
<a href="https://www.pnas.org/doi/epdf/10.1073/pnas.2315363121" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Fan, Y., Schlezinger, J., Ehrlich, S., Webster, T., Hyötyläinen, T., Pedersen, O., Orešič, M. Exposure to environmental toxicants is associated with gut microbiome dysbiosis, insulin resistance and obesity. <strong> Environ. Int. </strong>, 186, 108569.
<a href="https://doi.org/10.1016/j.envint.2024.108569" target="_blank">[html]</a>
<a href="https://pdf.sciencedirectassets.com/271763/AIP/1-s2.0-S0160412024001557/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjEBwaCXVzLWVhc3QtMSJGMEQCIHVQFdpPp1qkOqi%2FuQuxAQM6WksbD9ND40O8shgHAgozAiAcyNQUEXqvL%2BRxbbBK6fv7xr7W4Aa1s6%2BQhghJ4KQTvSqzBQg1EAUaDDA1OTAwMzU0Njg2NSIMpEpySQzw1Fiq4zOCKpAFtzgUykL0uifs%2BJNBH5lSiiScntwkpM8fLFtzc96v6w%2BF%2FsYol0X6WRWsR3k6yqy9wG6DIfRG5%2BnjhqxNMMDjIFsIh%2FAeBbqT0VDi6m8X3ytvXU9aP%2FyfLBohlrsobf%2BUQmJ6p90WFZNH33R96g6QkLbuKK1btJd7riw93KowxfPBd867NnCIHYkCPb525w2o9C6SmkoH1klHgRennSXce41gOSiukgH3T7wyNjELzE7t%2BLLKxnIENelU7Ri717QcQ5DmSW38qfASvbaBj77fWzF%2Feh%2B%2FJ01a0eKuSNPSckOh00xfg%2BQXWHS3i%2B7eioIFQ81VOHXFXZ3P0sVSKMo%2Bn%2B4HyVs5f4SZxeh8J5lBSpBMxxOnSLGCEWtb2Dsj8U2AmD5Cgd5JTcbRBIW0mk%2FG5om4tnnHcToZbLgppMNzaVUTpWfwdnd0xdceSOF%2FD6XMMAT%2B6CU%2FAl5lzY5XfQp76QQ1wVvDvxfl9ukqXujAV%2BN%2BASQ3mYAGx7cV4FHgQ1zDB%2F2wUrgINYoeaRlGIB0xZjV3eJ%2FdXmSsnpcSx3kqIs48lvXhMP1hMos2RdEg9d9anYBUrU5qQ08Xo%2FzYhClemq3l7HyPQrFTF419JDCo8da8bUG6XJWFzN2USQoe%2FejVOsbVWCL526BMZWcdW9RtkXYr1Y%2FDG7rUA2ARVwFvPzhsk5rTCLSO6T4gHgbFYci7DZ5cj2aFww9OfBDV6zpDrEMxFJE2t4BCUUpbq7nhQT6AyJr5e%2BieUY%2FQTNQ%2BZ53%2F%2FnsOyjekQCN3h6UNOHgVhJ4SWAet%2FmHuOl%2F7FIOuhgD6x46oZmaRuRkJXtxDLP97hefbjnzaUL4lxmmyGZtmJAfJR8J8ZUcKyY2uC1XyAFAw45%2FyrwY6sgEw7%2Fi95tcNG4lZrnJBg0lBT23WOzGaKJkrZ3%2BEnOVGFdhy1ivDVP0Mg60NAN2XnLcvJqkLLEgs9xAgZXo44swmtbMs4IAkbd0Z0u2C2uSPjTfZHXtqDWDwk%2BuExreyTtB8aNNTmt7FjnOpzDIBm3tphtJFO8d7YHCmnTriRyTdmem%2BslHBPtV5%2BXKPwMfl4G03VLRLsoeAgrLickdCx3Ozna1wRolYD09SaZcut%2Bqm0NGb&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20240321T205156Z&X-Amz-SignedHeaders=host&X-Amz-Expires=300&X-Amz-Credential=ASIAQ3PHCVTY63XE53BB%2F20240321%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=c3bfef09bc1c66662d0d510be858b820cb27d826e56a5be6220e3ddf13507dc5&hash=d23ec02a376d6db5371c4921f74f64eef23bd8349e74aef6a729a880cf6faa4b&host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&pii=S0160412024001557&tid=spdf-067ce4b3-8637-429a-9897-ce7034d7b91f&sid=cdb8039918faa04e5f782862787a4e086895gxrqa&type=client&tsoh=d3d3LnNjaWVuY2VkaXJlY3QuY29t&ua=1b125a525e5f035706&rr=8680d2a3bd0f123d&cc=us" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P.* </strong>, Emese, P.*, Honkanen, J.K., Chen, O., Yolken, R., Jaana, S. Dysregulation of microbiota in first episode psychosis patients were associated with symptom severity and treatment response. <strong> Biol. Psychiatry. </strong>, 95(4):370-379.
<a href="https://www.sciencedirect.com/science/article/pii/S0006322323017511" target="_blank">[html]</a>
<a href="https://pdf.sciencedirectassets.com/271200/AIP/1-s2.0-S0006322323017511/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjEA8aCXVzLWVhc3QtMSJHMEUCIQCCjoe%2FS3UvPOh5Ifv9mK0wsWNzLtFRH2pPQnyYHzgF0wIgQ1fqvWbSrDohNNRkBRqR0M2t3FwsHqGVU%2BRO%2FKhvq%2FIquwUImP%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FARAFGgwwNTkwMDM1NDY4NjUiDJxIZ5s0SVdF9gNFjCqPBWBaRSnwR8x%2B%2F8CgDxRann0yTI1pCNL%2FCBHX0VilGbGtGyYoF3JdOcmg%2BZWz0sxRgx0AvtPZbOHBfJhFsIs0lxBQ4p5u6%2BzY3gr2XUiiUfv3ZVsmcO3EXOWcM%2FuOXy3O1qdtnF4BgHk5mbl7%2FEWkq3X5bMAfc0kIfP33K4aWV6H3rrsmmZCS8iaRhD8h7MuiYvIDzbWbm%2By%2BnzUgbNzFv9E9y90PYG4XxkCR610in1vfHVtusKTBvqGnYKL6GlcHFeh%2FiKIsdIoeTGjx5XrxF%2BTzHTs%2FAdmOzMBgpdJxMm1Xl6tPzx3mqijBT9EVzZoHW8WEtIZIUcuggpq4SC8z3oKqFi0bXeyO0VrvqzUheQislaXJD7Y4%2BuPlzt71jKGf1ih5OeCCicfL0sGXKdYHLUAD1qxFiQXRQKTrlBEeMH2Q5OQZxnXnVIAivsurCHbWTIh1epGGFBueVHQf4NfP6XwaX7kFHft1ydvHaky2JVueCW3zKh36bdGjeEg69PAZCASLzvWIBLCTTtV8Koo%2BT0DCudQ2HOGcuVQ%2FrX97ihB0BLze0gB%2Bdnn7IvN0pSvXDt7MZk6lh4bGgxIG9DXUb74AqW%2BSKiVwNuedtXCmV8cQ%2BVaNZaGBg9ozdAWR093pcrvNHw1fCCySfz5RNHu%2BiVZ4UcfYdZe0cF5411x2XKjZZdRffrQrLbOdS46VWrT2ciZtCTCPMTnQRuF5f%2Bnf99yRaPM1yExjERHon4qhOAE2%2Flidu8UO8mhTi1%2BRJfa%2FwFUnVbyzr%2BQ%2Bm7ELjCxt%2B2uCSEFvV3%2Bl6AkRJHiOu%2BofqSFZ4eFGMR%2FIrm6kRDmEymZ4CoIXC09g3frpzrss2N0fLh0BPYyukpnyDqyDzIcwiq6trAY6sQGnCZ2GJ6iO8%2Bxp%2FLZWBo%2FuRYMWlmY2PJTSRLPdvbe%2Btsai42klcU6ppcNr%2BhZHk3IAlynhzIgBajhtigDec1w2YPu0j7HZn%2FF%2BrlRLCVGeYrH9rUOjZlhBHmSKX9Lma1u%2BsZS1vcjzdwsfgOLKKnTOql0nwGP%2BElKJMPKnyaOZE56yLibZBNnWBOBr6EN4w7xiyDxEWpUWcfSJeOV4IckujdOy8R%2BxsxTU0rZ3LJQfg4k%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20231226T235445Z&X-Amz-SignedHeaders=host&X-Amz-Expires=300&X-Amz-Credential=ASIAQ3PHCVTYWUX4RPNX%2F20231226%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=e5d2d3883e52217baea3d8e61cc749cb46bfe1b45b0e9eaadb0e3dbcfc5e469c&hash=4b77210e75bb3bbdf7cf9f2ee43fd3c5137f0b7ab246f707796289dcac912d0f&host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&pii=S0006322323017511&tid=spdf-6d21f7fb-4b46-486d-bbb2-ee0808180aae&sid=784078142831714e1b1bc1631f2ec6bcbb58gxrqa&type=client&tsoh=d3d3LnNjaWVuY2VkaXJlY3QuY29t&ua=040a5d520405525e51&rr=83bd402fbdc7d963&cc=fi" target="_blank">[pdf]</a>
</li>
</ul>
<div>
<div class="h3"> 2023 </div>
</div>
<ul>
<li>
Scheidt, Wv., Reichart, B., Meiser, B., Scheidt, Mv., <strong> Sen, P. </strong>, Schwarz, F., Harmel, E., Bengel, FM., Dick, A., Ueberfuhr, P., Reichenspurner, H., Jaeckel, E., Schwinzer, R., Hagl, C. Unique 40-year survival after heart transplantation with normal graft function and spontaneous operational tolerance. <strong> Clin. Res. Cardiol. </strong>, 1-11.
<a href="https://link.springer.com/article/10.1007/s00392-023-02341-x" target="_blank">[html]</a>
<a href="https://link.springer.com/content/pdf/10.1007/s00392-023-02341-x.pdf" target="_blank">[pdf]</a>
</li>
<li>
Sabatini, S., <strong> Sen, P. </strong>, Carli, F., Samantha Pezzica, S., Rosso, C., Lembo, E., Verrastro, O., Daly, A., Govaere, O., Cockel, S., Hyötyläinen, T., Mingrone, G., Bugianesi, E., Orešič, M., Gastaldelli, A. Higher Hepatic Glucose Production and Gluconeogenesis are Features of Severe Metabolic Dysfunction-Associated Steatohepatitis Even in Absence of T2D. <strong> Sneak Peek. </strong>
<a href="https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4563031" target="_blank">[preprint]</a>
</li>
<li>
Lamichhane, S., <strong> Sen, P. </strong>, Dickens, AM., Kråkström, Jorma, M., Johanna Lempainen, J., Hyoty, H., Lahesmaa, R., Veijola, K., Toppari, J., Hyötyläinen, T., Knip, M., Orešič, M. Circulating metabolic signatures of rapid and slow progression to type 1 diabetes in islet autoantibody-positive children. <strong> Front Endocrinol. </strong>, 14, 1211015.
<a href="https://www.frontiersin.org/articles/10.3389/fendo.2023.1211015/abstract" target="_blank">[html]</a>
<a href="https://www.frontiersin.org/articles/10.3389/fendo.2023.1211015/pdf?isPublishedV2=False" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Orešič, M. Integrating Omics Data in Genome-Scale Metabolic Modeling: A Methodological Perspective for Precision Medicine. <strong> Metabolites. </strong>, 13,7,855.
<a href="https://www.mdpi.com/2218-1989/13/7/855" target="_blank">[html]</a>
<a href="https://www.mdpi.com/2218-1989/13/7/855/pdf?version=1689740299" target="_blank">[pdf]</a>
</li>
<li>
Aatsinki, A.-K., Lamichhane, S. Isokääntä, H., <strong> Sen, P. </strong>, Kråkström, M., Alves, M. A., Keskitalo, A., Munukka, E., Karlsson, H., Perasto, L., Lukkarinen, M., Oresic, M., Kailanto, H.-M.; Karlsson, L., Lahti, L., Dickens, A. M. Dynamics of Gut Metabolome and Microbiome Maturation during Early Life. <strong> medRxiv. </strong>, 2023.05.29.23290441.
<a href="https://www.medrxiv.org/content/10.1101/2023.05.29.23290441v1.full" target="_blank">[preprint]</a>
</li>
<li>
Krefting, J., <strong> Sen, P. </strong>, David-Rus, D., Güldener, U., Hawe, J.S., Scheidt M.V., 2, Cassese, S., and Schunkert, H. Use of big data from health insurance for assessment of cardiovascular outcomes. <strong> Front. Artif. Intell. </strong>, 6.
<a href="https://www.frontiersin.org/articles/10.3389/frai.2023.1155404/full" target="_blank">[html]</a>
<a href="https://www.readcube.com/articles/10.3389/frai.2023.1155404" target="_blank">[pdf]</a>
</li>
<li>
Mathema, V., <strong> Sen, P. </strong>, Lamichhane, S., Khoomrung, S., Orešič, M. Deep learning facilitates multi-data type analysis and predictive biomarker discovery in cancer precision medicine. <strong> Computational and Structural Biotechnology Journal (CSBJ) </strong>, 21, 1372-1382.
<a href="https://doi.org/10.1016/j.csbj.2023.01.043" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S2001037023000405?token=3B54467B636D1D8BF76C6A144FFD2E8CD9E27899764EFDD284581CBDE0317F46FD639A4CEA5EF63B1AEDD382174CA34E&originRegion=eu-west-1&originCreation=20230515185258" target="_blank">[pdf]</a>
</li>
</ul>
<div>
<div class="h3"> 2022 </div>
</div>
<ul>
<li>
Lamichhane, S.*, <strong> Sen, P.* </strong>, Dickens, AM., Alves, MA., Härkönen, T., Honkanen, J., Vatanen, T., Xavier, RJ., Hyötyläinen, T., Knip, M., Orešič, M. Dysregulation of secondary bile acid metabolism precedes islet autoimmunity and type 1 diabetes. <strong> Cell Rep Med. </strong>, 100762.
<a href="https://www.sciencedirect.com/science/article/pii/S2666379122003172" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S2666379122003172?token=34B785541C3EE62DC1C2941751E31CC9446316CCD0B87371E282AB8C0B307DA81688D886E6561CE3F5F29C6D94379564&originRegion=eu-west-1&originCreation=20221007112413" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Govaere, O., Sinioja, T., McGlinchey, A., Geng, D., Ratziu, V., Bugianesi, E., Schattenberg, JM., Vidal-Puig, A., Allison, M., Cockell, S., Daly, AK., Hyötyläinen, T., Anstee, QM., Oresic, M. Quantitative modelling of human liver reveals dysregulation of glycosphingolipid pathways in nonalcoholic fatty liver disease. <strong> iScience </strong>, 104949.
<a href="https://www.cell.com/iscience/fulltext/S2589-0042(22)01221-4" target="_blank">[html]</a>
<a href="https://www.cell.com/action/showPdf?pii=S2589-0042%2822%2901221-4" target="_blank">[pdf]</a>
</li>
<li>
Ribeiro, HC., <strong> Sen, P. </strong>, P, Dickens, AM., Cruz, ECS., Oresic, M., Sussulini, A. Metabolomic and proteomic profiling in bipolar disorder patients revealed potential molecular signatures related to hemostasis. <strong> Metabolomics </strong>, 18(8), 1-13.
<a href="https://link.springer.com/article/10.1007/s11306-022-01924-5" target="_blank">[html]</a>
<a href="https://link.springer.com/content/pdf/10.1007/s11306-022-01924-5.pdf" target="_blank">[pdf]</a>
</li>
<li>
Johnson, Katherine., Leary J, Peter., Govaere, Olivier., Barter J, Matthew., Charlton H, Sarah., Cockell, Simon., Tiniakos, Dina., <em>et al.</em> Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: diagnostic and mechanistic relevance. <strong> JHEP Reports. </strong>, 4(2), 100409.
<a href="https://www.jhep-reports.eu/article/S2589-5559(21)00185-3/fulltext" target="_blank">[html]</a>
<a href="https://www.jhep-reports.eu/action/showPdf?pii=S2589-5559%2821%2900185-3" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Qadri, S., Luukkonen, P.K., Ragnarsdottir, O., McGlinchey, A., Jantti, S., Juuti, A., Arola, J., Schlezinger, J.J., Webster, T.F., <em>et al.</em> Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease. <strong> J Hepatol. </strong>, 76(2), 283-293.
<a href="https://www.journal-of-hepatology.eu/article/S0168-8278(21)02104-8/fulltext" target="_blank">[html]</a>
<a href="https://www.journal-of-hepatology.eu/action/showPdf?pii=S0168-8278%2821%2902104-8" target="_blank">[pdf]</a>
</li>
</ul>
<div>
<div class="h3"> 2021 </div>
</div>
<ul>
<li>
<strong> Sen, P. </strong>, Andrabi, S.B.A., Buchacher, T., Khan, M.M., Kalim, U.U., Lindeman, T.M., Alves, M.A., Hinkkanen, V., Kemppainen, E., Dickens, A.M., <em>et al.</em> Quantitative genome-scale metabolic modeling of human CD4+ T cell differentiation reveals subset-specific regulation of glycosphingolipid pathways. <strong> Cell Rep. </strong>, 37, 109973.
<a href="https://www.sciencedirect.com/science/article/pii/S2211124721014522" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S2211124721014522?token=725452602CF981CB1821AE9704AFAF3A85455899E6D7001B828729CA2AD77E90A6185394C9231E0B51BDBB377EBCDB4B&originRegion=eu-west-1&originCreation=20211204192104" target="_blank">[pdf]</a>
</li>
<li>
Petersen, A.O., Julienne, H., Hyotylainen, T., <strong> Sen, P. </strong>, Fan, Y., Pedersen, H.K., Jantti, S., Hansen, T.H., Nielsen, T., Jorgensen, T., <em>et al.</em> Conjugated C-6 hydroxylated bile acids in serum relate to human metabolic health and gut Clostridia species. <strong> Sci Rep.</strong>, 11, 13252.
<a href="https://www.nature.com/articles/s41598-021-91482-y" target="_blank">[html]</a>
<a href="https://www.nature.com/articles/s41598-021-91482-y.pdf" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Hyotylainen, T., and Oresic, M. 1-deoxyceramides - key players in lipotoxicity and progression to type 2 diabetes? <strong> Acta Physiol.</strong>, e13635.
<a href="https://onlinelibrary.wiley.com/doi/10.1111/apha.13635" target="_blank">[html]</a>
<a href="https://onlinelibrary.wiley.com/doi/epdf/10.1111/apha.13635" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Lamichhane, S., Mathema, V.B., McGlinchey, A., Dickens, A.M., Khoomrung, S., and Oresic, M. Deep learning meets metabolomics: a methodological perspective. <strong> Brief Bioinform. </strong> 22, 1531-1542.
<a href="https://academic.oup.com/bib/article-abstract/22/2/1531/5906899?redirectedFrom=fulltext" target="_blank">[html]</a>
<a href="https://academic.oup.com/bib/article-pdf/22/2/1531/36654017/bbaa204.pdf" target="_blank">[pdf]</a>
</li>
<li>
Alves, M.A., Lamichhane, S., Dickens, A., McGlinchey, A., Ribeiro, H.C., <strong> Sen, P. </strong>, Wei, F., Hyotylainen, T., and Oresic, M. Systems biology approaches to study lipidomes in health and disease. <strong> Biochim Biophys Acta Mol Cell Biol Lipids. </strong>, 1866, 158857.
<a href="https://www.sciencedirect.com/science/article/pii/S1388198120302493" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S1388198120302493?token=985E63CC319475E249AF8B19A5BF013EC539881F6BD338622C5A3B4B8514E0155891F40D62F2059DFC31A2E605FC7B4E&originRegion=eu-west-1&originCreation=20211204193332" target="_blank">[pdf]</a>
</li>
<li>
Dickens, A.M.*, <strong> Sen, P. </strong>*, Kempton, M.J., Barrantes-Vidal, N., Iyegbe, C., Nordentoft, M., Pollak, T., Riecher-Rössler, A., Ruhrmann, S., Sachs, G., <em>et al.</em> Dysregulated Lipid Metabolism Precedes Onset of Psychosis. <strong> Biol Psychiatry. </strong>, 89, 288-297.
<a href="https://www.sciencedirect.com/science/article/pii/S0006322320317741" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S0006322320317741?token=EE7D538F391F5159AE506C3AC6FF49BD348E9604A8E1F049C548A5489AB1F2D08FFEF27D774ACC04DF9EDEBF3200E875&originRegion=eu-west-1&originCreation=20211204193432" target="_blank">[pdf]</a>
</li>
<li>
Lamichhane, S., <strong> Sen, P. </strong>, Alves, M.A., Ribeiro, H.C., Raunioniemi, P., Hyotylainen, T., and Oresic, M. Linking Gut Microbiome and Lipid Metabolism: Moving beyond Associations. <strong> Metabolites. </strong>, 11.
<a href="https://www.mdpi.com/2218-1989/11/1/55" target="_blank">[html]</a>
<a href="https://www.mdpi.com/2218-1989/11/1/55/pdf" target="_blank">[pdf]</a>
</li>
<li>
Lamichhane, S. <strong>,* Sen, P. </strong>,* Dickens, A.M., Amaral Alves, M., Karkonen, T., Honkanen, J., Vatanen, T., Xavier, R.J., Hyotylainen, T., Knip, M., <em>et al.</em> Dynamics of gut microbiome - mediated bile acid metabolism in progression to islet autoimmunity. <strong> medRxiv. </strong>, 2021.2008.2020.21262371.
<a href="https://www.medrxiv.org/content/10.1101/2021.08.20.21262371v2" target="_blank">[preprint]</a>
</li>
<li>
<strong> Sen, P. </strong>, Govaere, O., Sinioja, T., McGlinchey, A., Geng, D., Ratziu, V., Bugianesi, E., Schattenberg, J.M., Vidal-Puig, A., Allison, M., <em>et al.</em> Quantitative genome-scale analysis of human liver reveals dysregulation of glycosphingolipid pathways in progressive nonalcoholic fatty liver disease. <strong> medRxiv. </strong>, 2021.2002.2009.21251354.
<a href="https://www.medrxiv.org/content/10.1101/2021.02.09.21251354v2" target="_blank">[preprint]</a>
</li>
<li>
Lamichhane, S., Dickens, A.M.,<strong> Sen, P. </strong>, Laurikainen, H., Borgan, F., Suvisaari, J., Hyötyläinen, T., Howes, O., Hietala, J., and Orešič, M. Association Between Circulating Lipids and Future Weight Gain in Individuals With an At-Risk Mental State and in First-Episode Psychosis. <strong> Schizophr Bull. </strong>, (47) 160–169
<a href="https://academic.oup.com/schizophreniabulletin/article/47/1/160/5865792?login=true" target="_blank">[html]</a>
<a href="https://scholar.google.com/scholar_url?url=https://academic.oup.com/schizophreniabulletin/article-pdf/47/1/160/36042082/sbaa087.pdf&hl=en&sa=T&oi=ucasa&ct=usl&ei=UMSrYauvPOPUsQKZ27PQDg&scisig=AAGBfm1cubOSyTsIAXGqg4pWE_ZWd1mk2A" target="_blank">[pdf]</a>
</li>
</ul>
</div>
<div>
<div class="h3"> 2020 </div>
</div>
<ul>
<li>
Sinisalu, L., <strong> Sen, P. </strong>, Salihović, S., Virtanen, S.M., Hyöty, H., Ilonen, J., Toppari, J., Veijola, R., Orešič, M., Knip, M., <em>et al.</em> (2020). Early-life exposure to perfluorinated alkyl substances modulates lipid metabolism in progression to celiac disease. <strong> Environ Res. </strong>, 188, 109864.
<a href="https://www.sciencedirect.com/science/article/pii/S0013935120307593" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S0013935120307593?token=3B0E7BB17A23FF06313A0EAE02C89DA9B1B958978810D3AB65A7CF69F74E6AB5ECF1B83D9850495CF28DD415C5D9FA6A&originRegion=eu-west-1&originCreation=20211206104004" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Dickens, A.M., López-Bascón, M.A., Lindeman, T., Kemppainen, E., Lamichhane, S., Rönkkö, T., Ilonen, J., Toppari, J., Veijola, R., Hyöty, H., Hyötyläinen, T., Knip, M., Orešič, M. (2020). Metabolic alterations in immune cells associate with progression to type 1 diabetes. <strong> Diabetologia. </strong> 63, 1017-1031.
<a href="https://link.springer.com/article/10.1007/s00125-020-05107-6" target="_blank">[html]</a>
<a href="https://link.springer.com/content/pdf/10.1007/s00125-020-05107-6.pdf" target="_blank">[pdf]</a>
</li>
<li>
McGlinchey, A., Sinioja, T., Lamichhane, S., <strong> Sen, P. </strong>, Bodin, J., Siljander, H., Dickens, A.M., Geng, D., Carlsson, C., Duberg, D., <em>et al.</em> (2020). Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes. <strong> Environ Int. </strong>, 143, 105935.
<a href="https://www.sciencedirect.com/science/article/pii/S0160412020318900" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S0160412020318900?token=578335165F0876D89411632090405DFCDC2D1F60A62FD98C42D44B8E346BADBCDFF55BB1CCADCF5E39D10E28630C664A&originRegion=eu-west-1&originCreation=20211206104207" target="_blank">[pdf]</a>
</li>
<li>
Khoomrung, S., Nookaew, I., <strong> Sen, P. </strong>, Olafsdottir, T.A., Persson, J., Moritz, T., Andersen, P., Harandi, A.M., and Nielsen, J. (2020). Metabolic Profiling and Compound-Class Identification Reveal Alterations in Serum Triglyceride Levels in Mice Immunized with Human Vaccine Adjuvant Alum. <strong> J Proteome Res. </strong>, 19, 269-278.
<a href="https://pubs.acs.org/doi/abs/10.1021/acs.jproteome.9b00517" target="_blank">[html]</a>
<a href="https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.9b00517" target="_blank">[pdf]</a>
</li>
</ul>
<div>
<div class="h3"> 2019 </div>
</div>
<ul>
<li>
<strong> Sen, P. </strong>, and Orešič, M. (2019). Metabolic Modelling of Human Gut Microbiota on a Genome Scale: An Overview. <strong> Metabolites. </strong>, 9
<a href="https://www.mdpi.com/2218-1989/9/2/22" target="_blank">[html]</a>
<a href="https://www.mdpi.com/2218-1989/9/2/22/pdf" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Carlsson, C., Virtanen, S.M., Simell, S., Hyöty, H., Ilonen, J., Toppari, J., Veijola, R., Hyötyläinen, T., Knip, M., <em>et al.</em> (2019). Persistent Alterations in Plasma Lipid Profiles Before Introduction of Gluten in the Diet Associated With Progression to Celiac Disease. <strong> Clin Transl Gastroenterol. </strong>, 10, 1-10.
<a href="https://journals.lww.com/ctg/Fulltext/2019/05000/Persistent_Alterations_in_Plasma_Lipid_Profiles.7.aspx" target="_blank">[html]</a>
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602763/pdf/ct9-10-e00044.pdf" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Lamichhane, S., Dickens, A., and Oresic, M. (2019). The Role of Omic Technologies in the Study of the Human Gut Microbiome. </strong> Reference Module in Food Science. </strong>
<a href="https://www.sciencedirect.com/science/article/pii/B9780081005965229223?via%3Dihub" target="_blank">[html]</a>
</li>
</ul>
<div>
<div class="h3"> 2018 - 2013 </div>
</div>
<ul>
<li>
Lamichhane, S., <strong> Sen, P. </strong>, Dickens, A.M., Oresic, M., and Bertram, H.C. (2018). Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe. <strong> Methods. </strong>, 149, 3-12.
<a href="https://www.sciencedirect.com/science/article/pii/S1046202317304371?via%3Dihub" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S1046202317304371?token=E7AEA0AACDA5E44B94CDF9F86E9878DC5F91AB7B57722EC47EFC90D3D3FB978AE51905184D4608C3BEBBD0264428F201&originRegion=eu-west-1&originCreation=20211206105158" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong> Kemppainen, E., and Orešič, M. (2017). Perspectives on Systems Modelling of Human Peripheral Blood Mononuclear Cells. <strong> Front Mol Biosci. </strong> 4, 96.
<a href="https://www.frontiersin.org/articles/10.3389/fmolb.2017.00096/full" target="_blank">[html]</a>
<a href="https://www.readcube.com/articles/10.3389/fmolb.2017.00096" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Mardinogulu, A., and Nielsen, J. (2017). Selection of complementary foods based on optimal nutritional values. <strong> Sci Rep. </strong>, 7, 5413.
<a href="https://www.nature.com/articles/s41598-017-05650-0" target="_blank">[html]</a>
<a href="https://www.nature.com/articles/s41598-017-05650-0.pdf" target="_blank">[pdf]</a>
</li>
<li>
Thankaswamy-Kosalai, S.*, <strong> Sen, P. </strong>*, and Nookaew, I. (2017). Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics. <strong> Genomics. </strong>, 109, 186-191.
<a href="https://www.sciencedirect.com/science/article/pii/S0888754317300204?via%3Dihub" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S0888754317300204?token=F0DA7FD9AB15CE1BF1BA1EAC2416F166B4C942332084704C0529999A10276DE6D2C3707EECF9D86BCF6801ECD8CD8B48&originRegion=eu-west-1&originCreation=20211206105541" target="_blank">[pdf]</a>
</li>
<li>
Vincent, A., Savolainen, O.I., <strong> Sen, P. </strong>, Carlsson, N.G., Almgren, A., Lindqvist, H., Lind, M.V., Undeland, I., Sandberg, A.S., and Ross, A.B. (2017). Herring and chicken/pork meals lead to differences in plasma levels of TCA intermediates and arginine metabolites in overweight and obese men and women. <strong> Mol Nutr Food Res. </strong>, 61.
<a href="https://onlinelibrary.wiley.com/doi/full/10.1002/mnfr.201600400" target="_blank">[html]</a>
<a href="https://onlinelibrary.wiley.com/doi/epdf/10.1002/mnfr.201600400" target="_blank">[pdf]</a>
</li>
<li>
Olafsdottir, T.A., Lindqvist, M., Nookaew, I., Andersen, P., Maertzdorf, J., Persson, J., Christensen, D., Zhang, Y., Anderson, J., Khoomrung, S., <strong> Sen, P. </strong>, <em>et al.</em> (2016). Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants. <strong> Sci Rep. </strong>, 6, 39097.
<a href="https://www.nature.com/articles/srep39097" target="_blank">[html]</a>
<a href="https://www.nature.com/articles/srep39097.pdf" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Vial, H.J., and Radulescu, O. (2016). Mathematical modelling and omic data integration to understand dynamic adaptation of Apicomplexan parasites and identify pharmaceutical targets. Comprehensive Analysis of Parasite Biology: <strong> From Metabolism to Drug Discovery </strong>, 7, 457.
<a href="https://onlinelibrary.wiley.com/doi/10.1002/9783527694082.ch20" target="_blank">[html]</a>
<a href="https://onlinelibrary.wiley.com/doi/pdf/10.1002/9783527694082.ch20" target="_blank">[pdf]</a>
</li>
<li>
Shoaie, S., Ghaffari, P., Kovatcheva-Datchary, P., Mardinoglu, A., <strong> Sen, P. </strong>, Pujos-Guillot, E., de Wouters, T., Juste, C., Rizkalla, S., Chilloux, J., <em>et al.</em> (2015). Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome. <strong> Cell Metab. </strong>, 22, 320-331.
<a href="https://www.sciencedirect.com/science/article/pii/S1550413115003307" target="_blank">[html]</a>
<a href="https://reader.elsevier.com/reader/sd/pii/S1550413115003307?token=018495CD7A513B46D3643F902072DC3646F670BA107FCC8B06060AB34CCE763AB6471A725E03D18511FCAA719419E6A1&originRegion=eu-west-1&originCreation=20211206105937" target="_blank">[pdf]</a>
</li>
<li>
<strong> Sen, P. </strong>, Vial, H.J., and Radulescu, O. (2013). Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways. <strong> BMC Syst Biol. </strong>, 7, 123.
<a href="https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-7-123" target="_blank">[html]</a>
<a href="https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-7-123.pdf" target="_blank">[pdf]</a>
</li>
</ul>
</div>
<div>
<div class="h3"> PhD thesis </div>
</div>
<ul>
<li>
<strong> Sen, P. </strong> (2013). Integrated modelling of lipid metabolism in Plasmodium, the causative parasite of malaria (Université Montpellier II-Sciences et Techniques du Languedoc).
<a href="https://tel.archives-ouvertes.fr/tel-01132704" target="_blank">[html]</a>
<a href="https://tel.archives-ouvertes.fr/tel-01132704/document" target="_blank">[pdf]</a>
<br/><br/><p> *Signifies equal contributions</p>
</li>
</ul>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="conferences">
<div class="education-section">
<h2 class="h2 fw-light mb-4"> Conferences and meetings </h2>
<ul>
<li> <strong> 2023: </strong> <a href="https://easl.eu/event/easl-congress-2023/" target="_blank"> EASL Congress 2023, Vienna, Austria </a> <em> (oral presentation)</em> </li>
<li> <strong> 2023: </strong> <a href="https://www.digimed-bayern.de/en/symposium-2023.html" target="_blank"> DigiMed Bayern Retreat: Team Meeting 12, Munich, Germany </a> </li>
<li> <strong> 2022: </strong> AISF monothematic conference - "Artificial Intelligence and liver diseases", Rome, Italy <em> (oral presentation)</em> </li>
<li> <strong> 2022: </strong> The 2nd Nordic Metabolomics Conference 2022, Copenhagen, Denmark <em> (oral presentation)</em> </li>
<li> <strong> 2022: </strong> 18th International Conference of the Metabolomics Society 2022, Valencia, Spain <em> (oral presentation)</em> </li>
<li> <strong> 2021: </strong> The International Liver Congress 2021, EASL, online <em>(oral presentation)</em> </li>
<li> <strong> 2021: </strong> 17th International Conference of the Metabolomics Society 2021 (online) <em>(poster presentation)</em> </li>
<li> <strong> 2020: </strong> EASD EGIR-NAFLD abstract meeting 2020 <em>(oral presentation)</em> </li>
<li> <strong> 2020: </strong> 16th International Conference of the Metabolomics Society 2020 (online) <em>(oral presentation)</em> </li>
<li> <strong> 2019: </strong> 15th International Conference of the Metabolomics Society 2019, The Hague, Netherlands (<em>oral and poster presentation)</em> </li>
<li> <strong> 2019: </strong> Metabolomics and Human Health, Gordon Research Conference, Ventura, CA, US <em>(oral presentation)</em> </li>
<li> <strong> 2019: </strong> Nordic Metabolomics Society meeting, Oslo, Norway <em>(poster presentation)</em> </li>
<li> <strong> 2018: </strong> Nordic Metabolomics Society meeting, Orebro, Sweden <em>(oral and poster presentation)</em> </li>
<li> <strong> 2016: </strong> BioVacSafe EU meeting, Lyon, France <em>(poster presentation)</em> </li>
<li> <strong> 2015: </strong> 4th Conference on Constraint-Based Reconstruction and Analysis (COBRA), Germany <em>(poster)</em> </li>
<li> <strong> 2015: </strong> Workshop on metabolic phenotyping in personalized health care, Imperial College London <em>(poster)</em> </li>
<li> <strong> 2015: </strong> Informatics Alignment Workshop, eTRICKS, Imperial College London </li>
<li> <strong> 2015: </strong> BioVacSafe EU meeting, Ghent, Belgium <em>(poster presentation)</em> </li>
<li> <strong> 2013: </strong> The Evimalar cluster 1-4 meeting, Créte, Greece <em>(oral and poster presentation)</em> </li>
<li> <strong> 2013: </strong> 9th Annual BioMalPar, EVIMalar conference, EMBL, Heidelberg, Germany <em>(poster)</em> </li>
<li> <strong> 2013: </strong> IT workshop on RNA-Seq, PlasmoDB, GeneDB, VectorBase, EMBL ATC, Heidelberg, Germany </li>
<li> <strong> 2012: </strong> Metabolomics workshop, University of Glasgow, UK </li>
<li> <strong> 2011: </strong> EVIMALAR cluster 4 meeting, Delft, Netherlands <em>(poster presentation)</em> </li>
</ul>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="editorials">
<div class="education-section">
<h2 class="h2 fw-light mb-4"> Editorial activities </h2>
<ul>
<li> <strong> 2022 - 2023: </strong> Guest editor at Life (ISSN 2075-1729), a MDPI journal: Co-edited a special issue entitled "Interactions between Microorganisms, Their Environment and Host".
<a href="https://www.mdpi.com/journal/life/special_issues/Microorganism_Host" target="_blank">[weblink]</a>
</li>
</ul>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="achievements">
<div class="education-section">
<h2 class="h2 fw-light mb-4">Academic achievements </h2>
<ul>
<li><strong> 2019: </strong> Travel award from University of Turku for Gordon Research Conference, Ventura, CA, US </li>
<li><strong> 2018: </strong> Travel award from Nordic Metabolomics society, Örebro, Sweden </li>
<li><strong> 2016: </strong> Travel grants (3 times) from Kunt and Alice Wallenberg foundation, Gothenburg, Sweden.</li>
<li><strong> 2012: </strong> Travel grant form University of Montpellier 2, France, to attend metabolomics workshop at University of Glasgow, UK. </li>
<li><strong> 2010: </strong> Korean Government Fellowship Program (KGSP 2010), South Korea via Ministry of HRD, New-Delhi, India. </li>
<li><strong> 2007: </strong> Fellowship from National Institute of Pharmaceutical Education and Research (NIPER) to pursue MS Pharm study. MS Pharm second best student (Parmacoinformatics, batch 2009). </li>
<li><strong> 2007: </strong> Graduate aptitude test in engineering (GATE), Indian Institutes of Technology (IIT). </li>
</ul>
</div>
</div>
<div class="shadow-1-strong bg-white my-5 p-5" id="news">
<div class="reference-section">
<h2 class="h2 fw-light mb-4">News</h2>
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<div class="header-bio m-3 mb-0">
<h3 class="h6 mb-2" data-aos="fade-left" data-aos-delay="0"> Open for submission! </h3>
<p class="text-muted text-small" data-aos="fade-left" data-aos-delay="0"> Special Issue: Interactions between Microorganisms, Their Environment and Host </p>
</div>
</div>
<div class="d-flex">
<i class="text-secondary fas fa-quote-left" style="font-size: 12px;"></i>
<p class="lead mx-1" data-aos="fade-left" data-aos-delay="0"> Happy to edit a Special Issue: "Interactions between Microorganisms, Their Environment and Host" for Life (ISSN 2075-1729), a MDPI journal, alongside Dr. Manish Kumar at USCD, California.
<i class="text-secondary fas fa-quote-right" style="font-size: 12px;"></i>
<a href="https://www.mdpi.com/journal/life/special_issues/Microorganism_Host" target="_blank" style="font-size: 14px;"> For more info </a></p>
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<a class="twitter-timeline" data-width="500" data-height="450" href="https://twitter.com/partho_phd?ref_src=twsrc%5Etfw"> by @partho_phd </a> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
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<h2 class="h2 fw-light text mb-4">Contact</h2>
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