README.md

Datasets

This directory stores example data which can be retrieved using the load_example_data function from pydeseq2.utils. Only synthetic data is provided for now, but new datasets might be available in the future.

The tests_clinical.csv and test_counts.csv files were generated using a custom modification of the makeExampleDESeqDataSet method of DESeq2, to handle several factors.

Folder organisation

PyDESeq2
│
└───datasets
        │
        └───synthetic   
            │       test_clinical.csv
            │       test_counts.csv