ParseSimulationInputParameters.m

function [SAVEDIR, NAME, MODEL, INTEGRATOR, THERMOSTAT, TRACKERS, dt, CONDITION, MODE, NAMINGCONVENTION, useGpu] = ParseSimulationInputParameters(varargin)
        
    Globals.includeSubfolders();
    In = Utility.InputParser()...
        .addLogical("GPU", false) ...
        .parse(varargin{:});
    useGpu = In.GPU;    
    Globals.VerbosityLevel('debug');
    Options.usingGpuComputation(In.GPU);
    
    rng('shuffle', 'twister');
    
    In = Utility.InputParser()...
        .addString("SAVEDIR") ...
        .addString("NAME") ...
        .addObject("MODEL", "IModel") ...
        .addObject("INTEGRATOR", "IIntegrator") ...
        .addObject("THERMOSTAT", "IThermostat") ...
        .addObject("POTENTIAL", "IPotential", []) ...
        .addString("TRACKERS") ...
        .addFloat("DT") ...
        .addObject("UNTIL", "ISimulationCondition") ...
        .addString("NAMINGCONVENTION") ...
        .addString("MODE", "run") ...
        .parse(varargin{:});
    
    dt = In.DT;
    NAME = In.NAME;
    MODEL = In.MODEL;
    INTEGRATOR = In.INTEGRATOR;
    THERMOSTAT = In.THERMOSTAT;
    SAVEDIR = In.SAVEDIR;
    CONDITION = In.UNTIL;
    NAMINGCONVENTION = In.NAMINGCONVENTION;
    
    % There are 3 Modes: "new run", "equillibrate", "test run", "continue run"
    MODE = In.MODE;
    
    if ~isempty(In.POTENTIAL)
        MODEL.Potential = In.POTENTIAL;
    end
    
    if ~isfolder(SAVEDIR); mkdir(SAVEDIR); end
    TRACKERS = eval(sprintf("{%s}", In.TRACKERS));
end