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    38 repositories

    • sister-and-homologue-distances-trackmate

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • omero-user-scripts

      Public
      Plugins for OMERO
      Python
      •
      GNU General Public License v2.0
      •53•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • Decon_clij

      Public
      ImageJ Macro
      •
      MIT License
      •0•0•1•0•Updated Jun 26, 2025Jun 26, 2025

    • PetaKit5DfromSLD

      Public
      MATLAB
      •
      Other
      •8•1•15•0•Updated Jun 19, 2025Jun 19, 2025

    • gfactor

      Public
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • matlab_omero_save_to_tif

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • AverageIntensityAndCount

      Public
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • python_napari_training

      Public
      Training materials for python/napari workshops
      Jupyter Notebook
      •
      MIT License
      •0•1•1•0•Updated Dec 2, 2024Dec 2, 2024

    • FRAPanalysis

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • SpotsInCells

      Public
      Finding cell outlines, counting number of spots in each, saving to OMERO
      ImageJ Macro
      •
      MIT License
      •1•0•1•0•Updated Apr 23, 2024Apr 23, 2024

    • KinetochoreCount

      Public
      Find and count kinetochores in embryos
      ImageJ Macro
      •
      MIT License
      •1•0•1•0•Updated Apr 11, 2024Apr 11, 2024

    • BacteriaArea

      Public
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Apr 4, 2024Apr 4, 2024

    • RA_Fish

      Public
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • StructuralTensorForAnisotropy

      Public
      MIT License
      •1•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • NucleiOrientation

      Public
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • CountingFociInsideNuclei

      Public
      ImageJ Macro
      •1•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • 40WellIntensityRecorder

      Public
      ImageJ Macro
      •1•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • StackAndBlind

      Public
      ImageJ Macro
      •1•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • BinnedProfileIntensityOverTime

      Public
      MATLAB
      •1•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • NucleiCounting

      Public
      ImageJ Macro
      •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • ROIIntensityTimeCourse

      Public
      ImageJ Macro
      •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • ZoomAttendenceMetrics

      Public
      Collate information from Teams attendence reports
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • MinimalOmeropy

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • CorrAndCov

      Public
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • warwickcamdu.github.io

      Public
      Github pages repo
      HTML
      •
      MIT License
      •4•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • OMEROimport

      Public
      Commands used to set up automatic imports to OMERO from microscopes
      omero-import
      Shell
      •
      MIT License
      •1•3•0•0•Updated Mar 11, 2022Mar 11, 2022

    • Matlab-app-for-collective-migration-plots-

      Public
      This repository contains files to mount or edit the design and scripts for a matlab app which provides various plots related to collective migration, based on .csv tracks outputted by imaris.
      MATLAB
      •2•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • BatchMacro

      Public
      Scripts for running a macro on a dataset from OMERO
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • MinimalOMEROImageJ

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated May 13, 2021May 13, 2021

    • LLSM

      Public
      This programme is to be used for the processing of raw lattice light sheet data, and has two main features (1) deskewing and creating maximum projections of raw lattice light sheet data and (2) performing microtubule track analysis using U-track (Danuser Lab).
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 23, 2021Apr 23, 2021