Repositories list

• ukb_rare_variant

  Public
  Rare variant analysis on UKB RAP

  Shell

  •0•1•0•0•Updated Sep 27, 2024Sep 27, 2024

• VarToGene

  Public
  Variant to gene mapping analysis within severe asthma GWAS

  HTML

  •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

• GRS_informed_QC

  Public
  R

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• deep_phewas_RAP_install

  Public
  WDL

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• PhD_webpage

  Public
  PhD webpage of Noemi Nicole Piga with analyses' reports to disseminate my research to my supervisors and beyond.

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 30, 2024May 30, 2024

• Gene_analysis

  Public
  Analysis of the 98 genes found from the variant-to-gene mapping analysis as from the severe asthma GWAS. These results will inform in vitro functional experiments in asthma-related cell lines.

  R

  •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• rare_collapsing

  Public
  Pipeline for rare variant collapsing analyses

  Shell

  •0•1•0•0•Updated Nov 27, 2023Nov 27, 2023

• muc5a_finemapping

  Public
  Fine-mapping MUC5A region in different asthma GWAS summary statistics

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 30, 2023Jun 30, 2023

• REGENIE_assoc_severe_asthma

  Public
  GWAS of severe asthma in UK Biobank using REGENIE

  HTML

  •0•0•0•0•Updated May 25, 2023May 25, 2023

• backbone_scripts

  Public
  Repository with backbone for scripts, such as .R, .Rmd, .sh, .py, .awk etc.

  Python

  •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

• exceed-pipelines

  Public
  EXCEED pipelines

  R

  •

  Other

  •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

• kaths_random_toolbox

  Public
  Scripts/pipelines usually related to genomic epidemiology but could be for more general tasks

  R

  •0•0•0•0•Updated Feb 14, 2022Feb 14, 2022

• examples

  Public
  R

  •1•0•0•0•Updated Jul 9, 2021Jul 9, 2021

• legenepi.github.io

  Public
  HTML

  •0•0•0•0•Updated May 17, 2019May 17, 2019

• HRC_imputation

  Public
  Awk

  •0•0•0•0•Updated Dec 13, 2018Dec 13, 2018

• locuszoom-standalone

  Public
  Create regional association plots from GWAS or meta-analysis

  Python

  •19•0•0•0•Updated Oct 10, 2017Oct 10, 2017

• plots

  Public
  R

  •0•0•0•0•Updated Aug 17, 2017Aug 17, 2017

• qqman

  Public
  R code for creating Manhattan plots and Q-Q plots for GWAS

  HTML

  •

  GNU General Public License v3.0

  •92•0•0•0•Updated Jun 5, 2017Jun 5, 2017

• proxysnps

  Public
  🔖 Get SNP proxies from the 1000 Genomes Project.

  R

  •

  MIT License

  •9•0•0•0•Updated Apr 27, 2017Apr 27, 2017

• conversion

  Public
  For file format conversion routines

  C

  •0•0•0•0•Updated Mar 21, 2017Mar 21, 2017

• db

  Public
  General database lookup routines

  R

  •0•0•0•0•Updated Jan 19, 2017Jan 19, 2017