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    127 repositories

    • toxtransformer

      Public
      BioSim model with Conditional Variational Autoencoder
      ml-model
      Jupyter Notebook
      •
      MIT License
      •1•1•0•1•Updated Aug 19, 2025Aug 19, 2025

    • dbsnp

      Public
      The Single Nucleotide Polymorphism Database
      brick
      R
      •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • openfda

      Public
      Adverse events, drug product labeling, and recall enforcement reports from FDA
      brick
      Python
      •1•2•3•0•Updated Aug 12, 2025Aug 12, 2025

    • harmonizome

      Public
      Python
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • fda

      Public
      U.S. Food and Drug Administration database
      brick
      Shell
      •0•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • faers

      Public
      Information on adverse event and medication error reports submitted to FDA
      fdabrickfda-dataset
      Shell
      •0•2•0•0•Updated Aug 12, 2025Aug 12, 2025

    • clinicaltrials

      Public
      ClinicalTrials.gov is a website and online database of clinical research studies and information about their results.
      brick
      Shell
      •0•0•1•0•Updated Aug 12, 2025Aug 12, 2025

    • onsides

      Public
      Dockerfile
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • cebs

      Public
      Python
      •0•0•1•0•Updated Aug 12, 2025Aug 12, 2025

    • biorxiv

      Public
      Shell
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • bioplanet

      Public
      Data assets from NCATS Bioplanet
      brick
      Python
      •0•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • biogrid

      Public
      brick
      Python
      •0•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • biobricks-script-lib

      Public
      Perl
      •0•0•1•0•Updated Aug 7, 2025Aug 7, 2025

    • openfda-kg

      Public
      brick
      Shell
      •0•1•7•1•Updated Aug 7, 2025Aug 7, 2025

    • biobricks-okg-testing

      Public
      0•2•0•1•Updated Aug 5, 2025Aug 5, 2025

    • pubchemrdf-kg

      Public
      The PubChem Compound, Substance, BioAssay databases in RDF format.
      brick
      Shell
      •0•1•0•0•Updated Aug 1, 2025Aug 1, 2025

    • biobricks-okg

      Public
      An open knowledge graph for BioBricks.ai
      data-integrationrml
      Perl
      •
      MIT License
      •0•1•11•3•Updated Jul 22, 2025Jul 22, 2025

    • dev-shell

      Public
      nix
      Nix
      •1•0•1•0•Updated Jul 8, 2025Jul 8, 2025

    • ice

      Public
      Curated in vivo and in vitro test data, in silico toxicity predictions, chemical property data, and reference chemical lists
      brickniceatm
      Shell
      •0•1•1•2•Updated Jul 2, 2025Jul 2, 2025

    • hgnc

      Public
      The HGNC is a resource for approved human gene nomenclature containing ~42000 gene symbols and names and 1300+ gene families and sets
      brick
      Clojure
      •0•1•1•0•Updated Jun 26, 2025Jun 26, 2025

    • chembl

      Public
      Manually curated database of bioactive molecules with drug-like properties
      bioinformaticsbrick
      Python
      •0•2•4•0•Updated Jun 14, 2025Jun 14, 2025

    • toxcast

      Public
      EPA data on 1,800 chemicals across 700+ assay endpoints
      brickepahigh-throughput-screeningtox21computational-toxicology
      R
      •0•1•1•0•Updated Jun 11, 2025Jun 11, 2025

    • nih-reporter

      Public
      The NIH RePORTER (Research Portfolio Online Reporting Tools Expenditures and Results) is a searchable database of federally funded biomedical research projects conducted at research institutions, providing information on project funding, results, and publications.
      brick
      Python
      •1•2•3•0•Updated Jun 11, 2025Jun 11, 2025

    • cpdb

      Public
      carcinogencity potency databse
      brick
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated May 13, 2025May 13, 2025

    • compait

      Public
      Data for an acute inhalation toxicity modeling challenge.
      brick
      Dockerfile
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • chemharmony

      Public
      integrated chemical-property-values from many source databases.
      data-integration
      Python
      •1•3•3•0•Updated May 13, 2025May 13, 2025

    • human-protein-pdb

      Public
      brick
      Python
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • iuclid

      Public
      data from https://iuclid6.echa.europa.eu/
      0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • cpdat

      Public
      49k chemicals categorized by usage or function in 16k consumer products (e.g. shampoo, soap)
      brickepacomputational-toxicologycomptox
      Python
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • orthodb

      Public
      The hierarchical catalog of orthologs mapping genomics to functional data
      brick
      Dockerfile
      •0•0•0•1•Updated Feb 26, 2025Feb 26, 2025