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    16 repositories

    • tabixpy

      Public
      Tabix reader written 100% in Python
      bioinformaticsvcftabix
      Python
      •
      Other
      •0•8•1•1•Updated Sep 3, 2024Sep 3, 2024

    • snakemake-executor-plugin-kubernetes

      Public
      A snakemake executor plugin for submission of jobs to Kubernetes
      Python
      •
      MIT License
      •8•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • snakemake-storage-plugin-azure

      Public
      Snakemake storage plugin for Azure Blob Storage
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • CaSilico

      Public
      Shell
      •0•0•0•0•Updated Aug 10, 2023Aug 10, 2023

    • django-python3-ldap

      Public
      Django LDAP user authentication backend for Python 3.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •120•0•0•0•Updated Dec 17, 2021Dec 17, 2021

    • RInno

      Public
      How to install local shiny apps
      HTML
      •
      Other
      •67•0•0•0•Updated Aug 14, 2020Aug 14, 2020

    • DatabricksGenomics

      Public
      Collection of DataBricks notebooks used for several parts of the genomics workflow
      Python
      •1•0•0•0•Updated Oct 11, 2019Oct 11, 2019

    • GenomeTester4

      Public
      A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
      C
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated Oct 7, 2019Oct 7, 2019

    • ena-fast-download

      Public
      Download FASTQ files of reads from the European Nucleotide Archive (ENA)
      Python
      •
      GNU General Public License v3.0
      •38•0•0•0•Updated Aug 1, 2019Aug 1, 2019

    • CoSSA-workflows

      Public
      CoSSA (Prodhomme et al., 2019) is a set of workflows used to identify quickly and efficiently haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data. All the contributors to the design of these workflows are Danny Esselink, Charlotte Prodhomme and Theo Borm (Wageningen University UR Plant Breeding).
      Shell
      •4•0•0•0•Updated Apr 29, 2019Apr 29, 2019

    • nbvscodeproxy

      Public archive
      vscode jupyterlab proxy
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 12, 2019Apr 12, 2019

    • nbrsessionproxy

      Public
      Jupyter extensions for running an RStudio rsession proxy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •86•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • polytools

      Public
      Java
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 4, 2018Jul 4, 2018

    • ldapauthenticator

      Public
      LDAP Authenticator Plugin for Jupyter
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •178•0•0•0•Updated Feb 1, 2018Feb 1, 2018

    • wrapspawner

      Public
      Mechanism for runtime configuration of spawners for JupyterHub
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •60•0•0•0•Updated Feb 1, 2018Feb 1, 2018

    • dockerspawner

      Public
      Spawns JupyterHub single user servers in Docker containers
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •310•0•0•0•Updated Feb 1, 2018Feb 1, 2018