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@VCCRI Victor Chang Cardiac Research Institute

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    61 repositories

    • KICA

      Public
      KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
      MATLAB
      •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • kic_data_analyser

      Public
      MATLAB
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • VSCode-DevContainer-dockerfile

      Public
      Initiate a VS Code dev container from a dockerfile
      dockerdockerfiledevopsdevelopmentdevcontainer
      0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • LQTS-BB-Hons24

      Public
      LQTS BB Honours Project 2024 (itak1): Holter feature detection, heatmap and paired analysis of Holter ECGs
      MATLAB
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • LAMA

      Public
      Automatic phenotyping tool for 3D images
      Python
      •
      Other
      •6•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • ShinyCell

      Public
      Shiny Interactive Web Apps for Single-Cell Data
      R
      •
      GNU General Public License v3.0
      •57•0•0•1•Updated Aug 23, 2024Aug 23, 2024

    • Spliceogen

      Public
      Java
      •2•4•0•0•Updated Jul 21, 2024Jul 21, 2024

    • CAPS

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 12, 2024Jun 12, 2024

    • MetaDenovo

      Public
      MetaDenovo : An automated framework to detect de novo mutations from whole genome trio data using cloud computing technology.
      WDL
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 28, 2024May 28, 2024

    • SCN5A_SyncroPatch

      Public
      MATLAB
      •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • DCM_polygenic_study_2024

      Public
      A 2024 study on polygenic risk scores and familial inheritance of dilated cardiomyopathy
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • sSNVs

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 21, 2024Jan 21, 2024

    • variant_calling_and_annotation_pipeline

      Public
      Scripts to call, annotate and analyse variants for multiple samples of whole genome sequencing (WGS)
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • FibroblastIntegration

      Public
      Code related to the integration analysis of cardiac fibroblasts
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 14, 2023Nov 14, 2023

    • CompanyPortal

      Public
      Company-Portal-Icon
      0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • SpliceSM

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • TrioSim

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

    • FlowGrid

      Public
      Jupyter Notebook
      •
      MIT License
      •3•10•1•2•Updated Jul 6, 2023Jul 6, 2023

    • Sierra

      Public
      Discover differential transcript usage from polyA-captured single cell RNA-seq data
      alternative-splicingscrna-seqisoformsalternative-polyadenylationsierra
      R
      •
      GNU General Public License v3.0
      •17•49•22•0•Updated Jun 29, 2023Jun 29, 2023

    • ShinyCell-Docker

      Public
      Shiny Interactive Web Apps for Single-Cell Data
      R
      •
      GNU General Public License v3.0
      •57•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • vpv

      Public
      Volumetric viewer
      Python
      •
      Other
      •2•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • cipa_model_validation_docker

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 8, 2023Mar 8, 2023

    • azure-nextflow-cipa

      Public
      Nextflow
      •1•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • azure-nextflow

      Public
      automate azure batch deployment
      Rust
      •
      MIT License
      •4•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • cipa_master_training_docker

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • ecological_study_asbestos_ARD_2022

      Public
      A 2022 ecological study of asbestos consumption and asbestos related diseases (ARD)
      0•0•0•0•Updated Aug 20, 2022Aug 20, 2022

    • PBrowse

      Public
      A real-time collaborative genome browser
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•0•2•Updated Jun 20, 2022Jun 20, 2022

    • VCCRI.github.io

      Public
      HTML
      •0•0•0•0•Updated May 25, 2022May 25, 2022

    • RNASeqWorkflows

      Public
      HTML
      •0•0•0•0•Updated May 25, 2022May 25, 2022

    • Ularcirc

      Public
      An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
      rna-seqrna-seq-analysiscircular-rnasequencing-rnasplicing-visualizationsplicing-analysesbacksplicingcircrna
      R
      •
      GNU General Public License v3.0
      •7•15•7•0•Updated Apr 6, 2022Apr 6, 2022