Repositories list

• rampvis-api

  Public
  Node and Python FastAPI based RESTful APIs. The APIs are used by (1) RAMPVIS user interface: https://github.com/ScottishCovidResponse/rampvis-ui and (2) RAMPVIS Infrastructure management user interface: https://github.com/saifulkhan/rampvis-ontology-management-ui

  TypeScript

  •

  BSD 2-Clause "Simplified" License

  •4•6•8•0•Updated Feb 18, 2023Feb 18, 2023

• rampvis-ui

  Public
  This is a React based RAMP VIS visualisation interface. This client uses the REST API: https://github.com/ScottishCovidResponse/rampvis-api

  TypeScript

  •

  BSD 2-Clause "Simplified" License

  •6•7•6•3•Updated Feb 18, 2023Feb 18, 2023

• BEEP

  Public
  Bayesian Estimation of Epidemic Parameters using Model Based Proposals for MCMC

  C++

  •

  BSD 2-Clause "Simplified" License

  •2•4•0•0•Updated Jun 18, 2022Jun 18, 2022

• scrc-vis-modelling

  Public
  This is a repository for collating the visual analytics applications built by the visualisation team to support the different modelling teams.

  Jupyter Notebook

  •2•3•0•0•Updated Feb 9, 2022Feb 9, 2022

• scrc-vis-analytical

  Public
  This is a repository for the visual analytics prototypes built by the visualisation team

  Jupyter Notebook

  •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

• EnsembleVis

  Public
  Python

  •0•0•0•0•Updated Sep 13, 2021Sep 13, 2021

• modelling-software-checklist

  Public
  A checklist to help developers of modelling software assess and communicate their level of confidence in the software implementation and its readiness to yield trustworthy results.

  modelingreproducible-scienceepidemiology+ 3software-qualityresearch-software-engineeringscientific-software

  4•1•0•0•Updated Aug 24, 2021Aug 24, 2021

• EcoSISTEM.jl

  Public
  Julia package for running dynamic ecosystem and epidemiological simulations

  Julia

  •

  GNU General Public License v3.0

  •8•6•1•2•Updated Aug 6, 2021Aug 6, 2021

• data_pipeline_api

  Public archive
  API to access the data pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•3•7•Updated Jun 25, 2021Jun 25, 2021

• SCRCdata

  Public
  Processing scripts and templates for the SCRC data pipeline

  R

  •2•0•24•0•Updated Jun 9, 2021Jun 9, 2021

• ScottishCovidResponse.github.io

  Public
  Website containing information related to datasets, the data pipeline, and various other technical documents associated with the SCRC project

  HTML

  •0•0•0•0•Updated Jun 7, 2021Jun 7, 2021

• hugo_source_files

  Public
  When pushes are made to this repository, a GitHub actions workflow automatically deploys source files to the website

  SCSS

  •0•1•0•0•Updated Jun 7, 2021Jun 7, 2021

• fdp

  Public archive
  A CLI tool for the FAIR Data Pipeline

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•10•0•Updated May 21, 2021May 21, 2021

• simple_network_sim

  Public
  Adaptation of a simple network simulation model to COVID-19

  hacktoberfest

  Python

  •

  Other

  •5•6•0•2•Updated May 4, 2021May 4, 2021

• cpp-data-pipeline

  Public archive
  C++ Wrapper for Python API

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 16, 2021Mar 16, 2021

• Covid_Simulation_Model

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •0•3•0•0•Updated Nov 11, 2020Nov 11, 2020

• DataRepository

  Public
  Main data repository for parameter estimates stored in the SCRC data registry

  parameterscovid-19

  BSD 2-Clause "Simplified" License

  •1•1•0•0•Updated Nov 9, 2020Nov 9, 2020

• hugo-book

  Public
  Hugo documentation theme as simple as plain book

  SCSS

  •

  MIT License

  •1.2k•0•0•0•Updated Oct 21, 2020Oct 21, 2020

• covid-uk

  Public
  A fork of LSHTM's COVID-19 model to adapt to our data

  R

  •

  GNU General Public License v3.0

  •28•0•0•0•Updated Sep 18, 2020Sep 18, 2020

• Covid19_EERAModel

  Public
  Simple COVID-19 simulation model with ABC-smc inference

  C++

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•7•Updated Sep 16, 2020Sep 16, 2020

• Contact-Tracing-Model

  Public
  Derived from the FMD model and contact data from Sibylle

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•2•0•0•Updated Sep 12, 2020Sep 12, 2020

• SimulationData.jl

  Public
  Prototype lightweight datadependency package for Simulation.jl.

  Julia

  •0•0•3•0•Updated Aug 27, 2020Aug 27, 2020

• inference-for-contact-tracing-model

  Public
  Parameter generation and sensitivty analysis for Scottish Covid

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• temporary_data

  Public
  Temporary example data repository

  0•0•0•1•Updated Jul 28, 2020Jul 28, 2020

• SCRCIssueTracking

  Public
  Central issue tracking repository for all repos in the consortium

  0•6•222•0•Updated Jul 14, 2020Jul 14, 2020

• covid-sim

  Public
  A fork of Imperial's COVID-19 model to adapt to our data

  C++

  •

  GNU General Public License v3.0

  •256•0•0•0•Updated Jul 8, 2020Jul 8, 2020

• data_pipeline_api_cpp

  Public
  C++ client API for data management pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•0•Updated Jul 4, 2020Jul 4, 2020

• SEIR-Model

  Public
  A simple parameterised Java SEIR

  Java

  •1•0•0•1•Updated Jul 2, 2020Jul 2, 2020

• SCRCshinyApp

  Public
  Shiny app for visualising data (SCRC)

  R

  •0•0•0•0•Updated Jun 27, 2020Jun 27, 2020

• SimpleContactTracing.jl

  Public
  Simple partner to the java contact tracing repository

  Julia

  •0•0•0•0•Updated May 23, 2020May 23, 2020