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As I understand, that script is outaded, at least for protein visualization. Try this out: https://github.com/Martini-Force-Field-Initiative/MartiniGlass |
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Dear developer,
I am trying to visualize elastic bonds of a multi-domain protein system. The system was prepared using charmm-gui and the simulation went well. However, when I tried to visualize the elastic bonds using the following command:
cg_bonds -top system.top -topoltype "elastic"
I got an error from vmd saying that "atomsel: setbonds: Need one bondlist for each selected atom". I tried both the latest cg_bonds.tcl and cg_bonds-v5.tcl and none of them worked. I also attached the system I am working with. Could you help me figure it out?
Best,
Cong
cg_system.zip
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