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@DIAGNijmegen Diagnostic Image Analysis Group

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    165 repositories

    • website-content

      Public
      This repository stores all the content for the diag websites.
      TeX
      •
      MIT License
      •73•6•28•14•Updated Feb 10, 2025Feb 10, 2025

    • bodyct-sybil-lung-cancer-risk

      Public
      Fork of the original Sybil repo, with adjustments by Fennie van der Graaf
      Python
      •
      MIT License
      •46•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • dragon_submission_llm_extractinator_gemma2

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • bodyct-sybil-lung-cancer-risk-2

      Public
      Deep Learning for Lung Cancer Risk Prediction using LDCT
      Python
      •
      MIT License
      •46•0•0•1•Updated Feb 7, 2025Feb 7, 2025

    • dragon_submission_LLM_data_extractor

      Public
      Submission to the DRAGON challenge (dragon.grand-challenge.org) using LLM_data_extractor
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • llm_extractinator

      Public
      This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • rse-workshop-challenge-masterclass

      Public
      Files for the Challenge-Hosting Masterclass (https://workshop2024.grand-challenge.org/)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • tumor-percentage-mil-regression

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • Literature

      Public
      The literature generated and cited by the group
      TeX
      •3•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • cobra-streamingclam

      Public
      Lightstream implementation of the StreamingCLAM model
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • ai4h-course

      Public
      0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • tradeoff_classification_alignment

      Public
      Python
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • rse-pyswot

      Public
      Python implementation of JetBrains/swot
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Feb 4, 2025Feb 4, 2025

    • dragon_submission_llm_extractinator_mistral-nemo

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • dragon_submission_llm_extractinator_phi4

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • rse-panimg

      Public
      Conversion of medical images to MHA and TIFF.
      Python
      •
      Apache License 2.0
      •5•14•5•0•Updated Jan 23, 2025Jan 23, 2025

    • albumentationsxl

      Public
      Albumentations with Pyvips backend for large image augmentations
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • lightstream

      Public
      A Pytorch Lightning implementation for streaming convolutional networks
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•5•0•Updated Jan 22, 2025Jan 22, 2025

    • nnUNet-for-pathology

      Public
      Adapted nnUNet framework with additional features to suit the requirements for pathology applications
      Python
      •
      Apache License 2.0
      •1.8k•11•0•0•Updated Jan 22, 2025Jan 22, 2025

    • Report-Guided-Annotation

      Public
      Report Guided Annotation
      detectionautomatic-annotation
      Python
      •
      MIT License
      •6•20•2•0•Updated Jan 21, 2025Jan 21, 2025

    • rse-gcapi

      Public
      Python client for the grand-challenge.org API
      Python
      •
      Apache License 2.0
      •3•2•8•2•Updated Jan 21, 2025Jan 21, 2025

    • rse-grand-challenge-forge

      Public
      Generation of challenge packs
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Jan 20, 2025Jan 20, 2025

    • picai_eval

      Public
      Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.
      detectionrocdiagnosisprecision-recallfrocmetricsevaluation
      Python
      •
      Apache License 2.0
      •10•21•0•0•Updated Jan 16, 2025Jan 16, 2025

    • dragon_prep

      Public
      Preprocessing scripts for the DRAGON benchmark
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • rse-cirrus-benchmark-suite

      Public
      A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.
      grand-challenge
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • pathology-whole-slide-learning

      Public
      library for weak whole slide learning with attention to compress and classify whole slide images
      Python
      •
      Apache License 2.0
      •1•0•1•0•Updated Dec 22, 2024Dec 22, 2024

    • pathology-whole-slide-packer

      Public
      extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white space
      Python
      •
      Apache License 2.0
      •2•5•0•0•Updated Dec 20, 2024Dec 20, 2024

    • bodyct-dram

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Dec 20, 2024Dec 20, 2024

    • bodyct-dram-emph-subtype

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • dinov2

      Public
      Adaption of DINOv2 for computational pathology
      Python
      •876•0•0•0•Updated Dec 19, 2024Dec 19, 2024