Repositories list

• processing_bacteria_WQMA_format

  Public
  this is a short repo for processing 2024 bacteria data into the new WQMA database format, prepared by Keleigh Reynolds

  0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• macroinvertebrate_processing

  Public
  This is an interim script to process macroinvertebrate data that comes in from contract labs and internal macroinvertebrate processing. This script relies on the BAP package to complete the scores and final tables.

  R

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• bwam_analytics

  Public
  Documentation describing BWAM data and best practices for interacting with the data when performing analytics.

  R

  •0•0•9•0•Updated Dec 6, 2024Dec 6, 2024

• probabalistic_streams

  Public
  This is repo for working up the probabalistic data. this will be a group effort and we can all contribute to the script with this repo.

  HTML

  •1•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• BAP

  Public
  R

  •2•0•7•0•Updated Aug 16, 2024Aug 16, 2024

• WQMA_integration_bap

  Public
  this is a repository to integrate processed BAP scores into the WQMA database format for Phase 1

  0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• lgss

  Public
  Low Gradient Streams IBI development

  HTML

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• ph_hardness_permit_tools

  Public
  This is reproducible repository for the pH and hardness tool for requested by permits in 2022. The data used in the workup is pre-WQMA preparation, and the data used for analysis is saved within this repo.

  0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• wave_data_processing

  Public
  this is a copy of the initial script written by Alene Onion for processing WAVE volunteer data for the new database format. Uploading to BWAMgithub for connections with the database.

  HTML

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• PATS

  Public
  0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• chem_hist_cleaning

  Public
  Compiling and cleaning historic SMAS chemistry data (through 2019) for submission to ITS.

  1•0•0•0•Updated Jun 8, 2023Jun 8, 2023

• sawmill_creek_update

  Public
  update presenation for the PEERS project

  R

  •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023

• toxicity_data_processing

  Public
  This is an initial commit of a processing script for toxicity data (in house and Aquatox) processing.

  R

  •0•0•0•0•Updated Mar 30, 2023Mar 30, 2023

• CALM_user_perception

  Public
  This is a repo for pulling and assessing the user perception data for the CALM

  R

  •1•0•0•0•Updated Mar 17, 2023Mar 17, 2023

• streams_probabilistic_draw_epa

  Public
  This is the internal draw for the 2023-2027 draw from the EPA's probabilistic GRTS sampling design.

  R

  •0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• SAS-Example

  Public
  R

  •0•0•0•0•Updated Jan 25, 2023Jan 25, 2023

• papyrus

  Public
  This is an original repository where the streams section can start doing the scrum section workplanning.

  1•0•0•0•Updated Oct 31, 2022Oct 31, 2022

• QAQC

  Public
  QAQC analysis of BWAM water chemistry data

  R

  •1•2•2•0•Updated Apr 4, 2022Apr 4, 2022

• Chem_raw_processing

  Public
  For processing raw chemistry EDDs; prep for running through BWAM/QAQC scripts.

  HTML

  •2•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• PDF.extractor

  Public
  R

  •1•0•0•0•Updated Dec 16, 2021Dec 16, 2021

• zipper

  Public
  Simplifies the Process of Unzipping Files in R

  R

  •

  Other

  •0•0•0•0•Updated Aug 3, 2021Aug 3, 2021

• ReportAutomation

  Public
  HTML

  •0•0•0•0•Updated Mar 23, 2021Mar 23, 2021

• assembler

  Public
  What the Package Does (One Line, Title Case)

  R

  •

  Other

  •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

• profile-vs-discrete

  Public
  An R project to compare high-frequency lake profile data to discrete samples.

  HTML

  •0•0•1•0•Updated Dec 22, 2020Dec 22, 2020

• NBI

  Public
  Nutrient Biotic Index Development

  R

  •

  Other

  •0•0•0•0•Updated Dec 7, 2020Dec 7, 2020

• validator

  Public
  Tools for Validating Internal and External BWAM Data

  HTML

  •

  Other

  •0•0•0•0•Updated Aug 24, 2020Aug 24, 2020

• Val

  Public
  Val is a shiny app for validating BWAM data.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Aug 13, 2020Aug 13, 2020

• asssessment_automation

  Public
  Automation of Assessment: Project Overview

  0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

• tele_logs

  Public
  HTML

  •0•0•0•0•Updated Apr 16, 2020Apr 16, 2020

• taxa_hierarchy_attributes

  Public
  HTML

  •0•0•0•0•Updated Jan 29, 2020Jan 29, 2020