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c302_C0_Social.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_C0_Social">
<notes>
Parameters and setting used to generate this network:
Data reader: SpreadsheetDataReader
c302 version: 0.9.1
owmeta version: - not installed -
owmeta_core version: - not installed -
Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']
Cell stimulated: []
Connection: []
Connection numbers overridden: None
Connection numbers scaled: None
Connection polarities override: None
Muscles: []
Known BioParameters:
BioParameter: ca_conc_decay_time = 20 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: ca_conc_rho = 0.0002 mol_per_m_per_A_per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: ca_simple_erev = 50 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: cell_diameter = 5 (SRC: BlindGuess, certainty 0.1)
BioParameter: exc_syn_ad = 20 per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: exc_syn_ar = .5 per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: exc_syn_beta = 0.25 per_mV (SRC: BlindGuess, certainty 0.1)
BioParameter: exc_syn_erev = 0 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: exc_syn_vth = -20 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: global_connectivity_power_scaling = 0 (SRC: BlindGuess, certainty 0.1)
BioParameter: inh_syn_ad = 10 per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: inh_syn_ar = .005 per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: inh_syn_beta = 0.5 per_mV (SRC: BlindGuess, certainty 0.1)
BioParameter: inh_syn_erev = -80 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: inh_syn_vth = -25 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: initial_memb_pot = -50 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: k_slow_erev = -80 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: leak_erev = -44 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_ca_simple_cond_density = 0.25 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_k_slow_cond_density = 0.3 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_leak_cond_density = 0.00105 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_length = 20 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_specific_capacitance = .6860 uF_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_spike_thresh = -20 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_ca_simple_cond_density = 0.06 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_k_slow_cond_density = 0.1 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_leak_cond_density = 0.05 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_specific_capacitance = 5 uF_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_spike_thresh = -20 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_elec_syn_gbase = 0.0001 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_exc_syn_conductance = 22.3 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_inh_syn_conductance = 0.25 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_elec_syn_gbase = 0.05 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_exc_syn_conductance = 5 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_inh_syn_conductance = 260 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: unphysiological_offset_current = 0 pA (SRC: KnownError, certainty 0)
BioParameter: unphysiological_offset_current_del = 0 ms (SRC: KnownError, certainty 0)
BioParameter: unphysiological_offset_current_dur = 2000 ms (SRC: KnownError, certainty 0)
</notes>
<include href="cell_C.xml"/>
<include href="custom_synapses.xml"/>
<fixedFactorConcentrationModel id="CaPool" ion="ca" restingConc="0 mM" decayConstant="20 ms" rho="0.0002 mol_per_m_per_A_per_s"/>
<gapJunction id="neuron_to_neuron_elec_syn" conductance="0.05 nS"/>
<silentSynapse id="silent"/>
<gradedSynapse2 id="neuron_to_neuron_exc_syn" conductance="5 nS" ar=".5 per_s" ad="20 per_s" beta="0.25 per_mV" vth="-20 mV" erev="0 mV"/>
<cell id="GenericMuscleCell">
<morphology id="morphology_GenericMuscleCell">
<segment id="0" name="soma">
<proximal x="0.0" y="0.0" z="0.0" diameter="5.0"/>
<distal x="0.0" y="20.0" z="0.0" diameter="5.0"/>
</segment>
</morphology>
<biophysicalProperties id="biophys_GenericMuscleCell">
<membraneProperties>
<channelDensity id="Leak_all" ionChannel="Leak" condDensity="0.00105 mS_per_cm2" erev="-44 mV" ion="non_specific"/>
<channelDensity id="k_slow_all" ionChannel="k_slow" condDensity="0.3 mS_per_cm2" erev="-80 mV" ion="k"/>
<channelDensity id="ca_simple_all" ionChannel="ca_simple" condDensity="0.25 mS_per_cm2" erev="50 mV" ion="ca"/>
<spikeThresh value="-20 mV"/>
<specificCapacitance value=".6860 uF_per_cm2"/>
<initMembPotential value="-50 mV"/>
</membraneProperties>
<intracellularProperties>
<species id="ca" concentrationModel="CaPool" ion="ca" initialConcentration="0 mM" initialExtConcentration="2E-6 mol_per_cm3"/>
<resistivity value="0.1 kohm_cm"/>
</intracellularProperties>
</biophysicalProperties>
</cell>
<cell id="GenericNeuronCell">
<morphology id="morphology_GenericNeuronCell">
<segment id="0" name="soma">
<proximal x="0.0" y="0.0" z="0.0" diameter="5.0"/>
<distal x="0.0" y="0.0" z="0.0" diameter="5.0"/>
</segment>
</morphology>
<biophysicalProperties id="biophys_GenericNeuronCell">
<membraneProperties>
<channelDensity id="Leak_all" ionChannel="Leak" condDensity="0.05 mS_per_cm2" erev="-44 mV" ion="non_specific"/>
<channelDensity id="k_slow_all" ionChannel="k_slow" condDensity="0.1 mS_per_cm2" erev="-80 mV" ion="k"/>
<channelDensity id="ca_simple_all" ionChannel="ca_simple" condDensity="0.06 mS_per_cm2" erev="50 mV" ion="ca"/>
<spikeThresh value="-20 mV"/>
<specificCapacitance value="5 uF_per_cm2"/>
<initMembPotential value="-50 mV"/>
</membraneProperties>
<intracellularProperties>
<species id="ca" concentrationModel="CaPool" ion="ca" initialConcentration="0 mM" initialExtConcentration="2E-6 mol_per_cm3"/>
<resistivity value="0.1 kohm_cm"/>
</intracellularProperties>
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="0 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_RMGR_1" delay="100ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_ASHR_1" delay="400ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_ASKR_1" delay="700ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_AWBR_1" delay="1000ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_IL2R_1" delay="1300ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_RMHR_1" delay="1600ms" duration="200ms" amplitude="5pA"/>
<pulseGenerator id="stim_URXR_1" delay="1900ms" duration="200ms" amplitude="5pA"/>
<network id="c302_C0_Social">
<property tag="recommended_duration_ms" value="2500"/>
<property tag="recommended_dt_ms" value="0.05"/>
<population id="ASHR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 .2 1"/>
<property tag="type" value="sensory"/>
<property tag="receptor" value="DCAR-1; DOP-4; NPR-1; NPR-2; NTR-1; NTR-2; OCR-2; OCTR-1; OSM-9; SER-3; SER-5; SRA-6; SRB-6; TMC-1; TRPA-1; TYRA-2; UNC-8"/>
<property tag="neurotransmitter" value="Glutamate"/>
<instance id="0">
<location x="-9.800000000000001" y="-265.625" z="41.0"/>
</instance>
</population>
<population id="ASKR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 .2 1"/>
<property tag="type" value="sensory"/>
<property tag="receptor" value="DAF-11; DOP-3; NPR-5; OSM-9; SRA-7; SRA-9; SRG-2; SRG-8; TYRA-3"/>
<property tag="neurotransmitter" value="Glutamate"/>
<property tag="OpenWormBackerAssignedName" value="Z.B."/>
<instance id="0">
<location x="-8.0" y="-268.024999999999977" z="46.399997999999997"/>
</instance>
</population>
<population id="AWBR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 .2 1"/>
<property tag="type" value="sensory"/>
<property tag="receptor" value="AEX-2; DAF-11; NPR-5; SER-5; SER-6; STR-1"/>
<property tag="neurotransmitter" value=""/>
<instance id="0">
<location x="-9.75" y="-266.225000000000023" z="43.100000000000001"/>
</instance>
</population>
<population id="IL2R" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 .2 1"/>
<property tag="type" value="sensory"/>
<property tag="receptor" value="DES-2; LGC-53; NPR-1; NPR-5"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-11.0" y="-285.0" z="49.350000000000001"/>
</instance>
</population>
<population id="RMGR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="NPR-1"/>
<property tag="neurotransmitter" value=""/>
<property tag="OpenWormBackerAssignedName" value="Bryan Nagle"/>
<instance id="0">
<location x="-12.5" y="-238.299990000000008" z="32.700000000000003"/>
</instance>
</population>
<population id="RMHR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="SER-1"/>
<property tag="neurotransmitter" value=""/>
<property tag="OpenWormBackerAssignedName" value="Martino"/>
<instance id="0">
<location x="-5.2999997" y="-265.899999999999977" z="35.700000000000003"/>
</instance>
</population>
<population id="URXR" component="GenericNeuronCell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron; sensory"/>
<property tag="receptor" value="GCY-1; GCY-25; GCY-32; GCY-34; GCY-35; GCY-36; GCY-37; NPR-1; PDFR-1; SRA-10"/>
<property tag="neurotransmitter" value=""/>
<instance id="0">
<location x="-7.35" y="-269.875" z="48.274999999999999"/>
</instance>
</population>
<electricalProjection id="NC_ASHR_ASKR_Generic_GJ" presynapticPopulation="ASHR" postsynapticPopulation="ASKR">
<electricalConnectionInstanceW id="0" preCell="../ASHR/0/GenericNeuronCell" postCell="../ASKR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_ASHR_RMGR_Generic_GJ" presynapticPopulation="ASHR" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../ASHR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_ASKR_ASHR_Generic_GJ" presynapticPopulation="ASKR" postsynapticPopulation="ASHR">
<electricalConnectionInstanceW id="0" preCell="../ASKR/0/GenericNeuronCell" postCell="../ASHR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_ASKR_RMGR_Generic_GJ" presynapticPopulation="ASKR" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../ASKR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_AWBR_RMGR_Generic_GJ" presynapticPopulation="AWBR" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../AWBR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_IL2R_RMGR_Generic_GJ" presynapticPopulation="IL2R" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../IL2R/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_IL2R_URXR_Generic_GJ" presynapticPopulation="IL2R" postsynapticPopulation="URXR">
<electricalConnectionInstanceW id="0" preCell="../IL2R/0/GenericNeuronCell" postCell="../URXR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_ASHR_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="ASHR">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../ASHR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_ASKR_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="ASKR">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../ASKR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_AWBR_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="AWBR">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../AWBR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_IL2R_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="IL2R">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../IL2R/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_RMHR_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="RMHR">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../RMHR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMGR_URXR_Generic_GJ" presynapticPopulation="RMGR" postsynapticPopulation="URXR">
<electricalConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../URXR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_RMHR_RMGR_Generic_GJ" presynapticPopulation="RMHR" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../RMHR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_URXR_IL2R_Generic_GJ" presynapticPopulation="URXR" postsynapticPopulation="IL2R">
<electricalConnectionInstanceW id="0" preCell="../URXR/0/GenericNeuronCell" postCell="../IL2R/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<electricalProjection id="NC_URXR_RMGR_Generic_GJ" presynapticPopulation="URXR" postsynapticPopulation="RMGR">
<electricalConnectionInstanceW id="0" preCell="../URXR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" synapse="neuron_to_neuron_elec_syn" weight="1.0"/>
</electricalProjection>
<continuousProjection id="NC_ASHR_RMGR_Glutamate" presynapticPopulation="ASHR" postsynapticPopulation="RMGR">
<continuousConnectionInstanceW id="0" preCell="../ASHR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" preComponent="silent" postComponent="neuron_to_neuron_exc_syn" weight="1.0"/>
</continuousProjection>
<continuousProjection id="NC_AWBR_ASHR_Glutamate" presynapticPopulation="AWBR" postsynapticPopulation="ASHR">
<continuousConnectionInstanceW id="0" preCell="../AWBR/0/GenericNeuronCell" postCell="../ASHR/0/GenericNeuronCell" preComponent="silent" postComponent="neuron_to_neuron_exc_syn" weight="1.0"/>
</continuousProjection>
<continuousProjection id="NC_RMGR_ASHR_FMRFamide" presynapticPopulation="RMGR" postsynapticPopulation="ASHR">
<continuousConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../ASHR/0/GenericNeuronCell" preComponent="silent" postComponent="neuron_to_neuron_exc_syn" weight="1.0"/>
</continuousProjection>
<continuousProjection id="NC_RMGR_URXR_FMRFamide" presynapticPopulation="RMGR" postsynapticPopulation="URXR">
<continuousConnectionInstanceW id="0" preCell="../RMGR/0/GenericNeuronCell" postCell="../URXR/0/GenericNeuronCell" preComponent="silent" postComponent="neuron_to_neuron_exc_syn" weight="1.0"/>
</continuousProjection>
<continuousProjection id="NC_URXR_RMGR_Glutamate" presynapticPopulation="URXR" postsynapticPopulation="RMGR">
<continuousConnectionInstanceW id="0" preCell="../URXR/0/GenericNeuronCell" postCell="../RMGR/0/GenericNeuronCell" preComponent="silent" postComponent="neuron_to_neuron_exc_syn" weight="1.0"/>
</continuousProjection>
<inputList id="Input_RMGR_stim_RMGR_1" population="RMGR" component="stim_RMGR_1">
<input id="0" target="../RMGR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_ASHR_stim_ASHR_1" population="ASHR" component="stim_ASHR_1">
<input id="0" target="../ASHR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_ASKR_stim_ASKR_1" population="ASKR" component="stim_ASKR_1">
<input id="0" target="../ASKR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_AWBR_stim_AWBR_1" population="AWBR" component="stim_AWBR_1">
<input id="0" target="../AWBR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_IL2R_stim_IL2R_1" population="IL2R" component="stim_IL2R_1">
<input id="0" target="../IL2R/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_RMHR_stim_RMHR_1" population="RMHR" component="stim_RMHR_1">
<input id="0" target="../RMHR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
<inputList id="Input_URXR_stim_URXR_1" population="URXR" component="stim_URXR_1">
<input id="0" target="../URXR/0/GenericNeuronCell" destination="synapses"/>
</inputList>
</network>
</neuroml>