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After my latest 'git pull' I'm getting this error during requests:
restvv_1 | CRITICAL: <class 'mysql.connector.errors.ProgrammingError'> 1146 (42S02): Table 'validator.transcript_info' doesn't exist restvv_1 | [2020-12-17 23:23:05,612] ERROR in app: Exception on /VariantValidator/variantvalidator/GRCh37/NM_000088.3:c.589G>T/all [GET] restvv_1 | Traceback (most recent call last): restvv_1 | File "/usr/local/lib/python3.6/site-packages/mysql/connector/connection_cext.py", line 506, in cmd_query restvv_1 | raw_as_string=raw_as_string) restvv_1 | _mysql_connector.MySQLInterfaceError: Table 'validator.transcript_info' doesn't exist restvv_1 | restvv_1 | During handling of the above exception, another exception occurred: restvv_1 | restvv_1 | Traceback (most recent call last): restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/vvMixinCore.py", line 446, in validate restvv_1 | toskip = use_checking.structure_checks(my_variant, self) restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/use_checking.py", line 71, in structure_checks restvv_1 | variant.gene_symbol = validator.db.get_gene_symbol_from_transcript_id(variant.input_parses.ac) restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/vvDBGet.py", line 66, in get_gene_symbol_from_transcript_id restvv_1 | return str(self.execute(query)[0]) restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/utils.py", line 18, in wrapper restvv_1 | out = func(self, *args, **kwargs) restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/vvDBGet.py", line 19, in execute restvv_1 | cursor.execute(query) restvv_1 | File "/usr/local/lib/python3.6/site-packages/mysql/connector/cursor_cext.py", line 266, in execute restvv_1 | raw_as_string=self._raw_as_string) restvv_1 | File "/usr/local/lib/python3.6/site-packages/mysql/connector/connection_cext.py", line 509, in cmd_query restvv_1 | sqlstate=exc.sqlstate) restvv_1 | mysql.connector.errors.ProgrammingError: 1146 (42S02): Table 'validator.transcript_info' doesn't exist restvv_1 | restvv_1 | During handling of the above exception, another exception occurred: restvv_1 | restvv_1 | Traceback (most recent call last): restvv_1 | File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 1950, in full_dispatch_request restvv_1 | rv = self.dispatch_request() restvv_1 | File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 1936, in dispatch_request restvv_1 | return self.view_functions[rule.endpoint](**req.view_args) restvv_1 | File "/usr/local/lib/python3.6/site-packages/flask_restplus/api.py", line 325, in wrapper restvv_1 | resp = resource(*args, **kwargs) restvv_1 | File "/usr/local/lib/python3.6/site-packages/flask/views.py", line 89, in view restvv_1 | return self.dispatch_request(*args, **kwargs) restvv_1 | File "/usr/local/lib/python3.6/site-packages/flask_restplus/resource.py", line 44, in dispatch_request restvv_1 | resp = meth(*args, **kwargs) restvv_1 | File "/app/rest_VariantValidator/endpoints/variantvalidator_endpoints.py", line 55, in get restvv_1 | validate = vval.validate(variant_description, genome_build, select_transcripts) restvv_1 | File "/usr/local/lib/python3.6/site-packages/VariantValidator/modules/vvMixinCore.py", line 1134, in validate restvv_1 | raise fn.VariantValidatorError('Validation error') restvv_1 | VariantValidator.modules.utils.VariantValidatorError: Validation error
The text was updated successfully, but these errors were encountered:
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After my latest 'git pull' I'm getting this error during requests:
The text was updated successfully, but these errors were encountered: