From d949832bfe4b29fe2dea96f566a815b08c275465 Mon Sep 17 00:00:00 2001 From: Szymon Szyszkowski Date: Fri, 18 Oct 2024 14:09:05 +0100 Subject: [PATCH] feat: updated config --- .../dags/config/gwas_catalog_sumstats_susie_clumping.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ot_orchestration/dags/config/gwas_catalog_sumstats_susie_clumping.yaml b/src/ot_orchestration/dags/config/gwas_catalog_sumstats_susie_clumping.yaml index 8b815cf..4f872c7 100644 --- a/src/ot_orchestration/dags/config/gwas_catalog_sumstats_susie_clumping.yaml +++ b/src/ot_orchestration/dags/config/gwas_catalog_sumstats_susie_clumping.yaml @@ -30,11 +30,11 @@ nodes: step.clumped_study_locus_output_path: gs://gwas_catalog_sumstats_susie/study_locus_lb_clumped step.lbc_baseline_pvalue: 1.0e-5 step.lbc_distance_cutoff: 250_000 - step.lbc_pvalue_threshold: 1.7e-11 + step.lbc_pvalue_threshold: 1.7e-8 step.lbc_flanking_distance: 100_000 step.large_loci_size: 1_500_000 step.wbc_clump_distance: 500_000 - step.wbc_pvalue_threshold: 1.7e-11 + step.wbc_pvalue_threshold: 1.7e-8 step.collect_locus: True step.remove_mhc: True step.session.write_mode: overwrite