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CITATION.cff
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cff-version: 1.2.0
title: Forest
message: "If you use Forest, please cite it using the metadata from this file."
type: software
authors:
- family-names: Barback
given-names: Josh
- family-names: Beukenhorst
given-names: Anna
orcid: "https://orcid.org/0000-0002-1765-4890"
- family-names: Clement
given-names: Zachary
- family-names: Efstathiadis
given-names: Georgios
orcid: "https://orcid.org/0009-0006-2278-1882"
- family-names: Emedom-Nnamdi
given-names: Patrick
orcid: "https://orcid.org/0000-0003-4442-924X"
- family-names: Huang
given-names: Emily J.
orcid: "https://orcid.org/0000-0003-1964-5231"
- family-names: Karas
given-names: Marta
orcid: "https://orcid.org/0000-0001-5889-3970"
- family-names: Liu
given-names: Greyson
- family-names: Ponarul
given-names: Nellie
- family-names: Straczkiewicz
given-names: Marcin
orcid: "https://orcid.org/0000-0002-8703-4451"
- family-names: Onnela
given-names: Jukka-Pekka
orcid: "https://orcid.org/0000-0001-6613-8668"
repository-code: "https://github.com/onnela-lab/forest"
url: "https://forest.beiwe.org"
abstract: "Forest is a library for analyzing smartphone-based high-throughput digital phenotyping data."
keywords:
- "digital phenotyping"
- smartphone
- statistics
- accelerometer
- GPS
license: BSD-3-Clause
references:
- authors:
- family-names: Straczkiewicz
given-names: Marcin
affiliation: "Department of Biostatistics, Harvard University"
orcid: "https://orcid.org/0000-0002-8703-4451"
- family-names: Huang
given-names: Emily J.
affiliation: "Department of Statistical Sciences, Wake Forest University"
orcid: "https://orcid.org/0000-0003-1964-5231"
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
doi: 10.1038/s41746-022-00745-z
journal: "npj Digital Medicine"
month: 2
start: 29
title: "A “one-size-fits-most” walking recognition method for smartphones, smartwatches, and wearable accelerometers"
type: article
volume: 6
year: 2023
- authors:
- family-names: Huang
given-names: Emily J.
affiliation: "Department of Mathematics and Statistics, Wake Forest University"
orcid: "https://orcid.org/0000-0003-1964-5231"
- family-names: Yan
given-names: Kebin
affiliation: "Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania"
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
doi: 10.3390/s22072618
issue: 7
journal: Sensors
start: 2618
title: "Smartphone-Based Activity Recognition Using Multistream Movelets Combining Accelerometer and Gyroscope Data"
type: article
volume: 22
year: 2022
- authors:
- family-names: Liu
given-names: Guangyu
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
doi: 10.1093/jamia/ocab069
issue: 8
journal: "Journal of the American Medical Informatics Association"
start: 1777
title: "Bidirectional imputation of spatial GPS trajectories with missingness using sparse online Gaussian Process"
type: article
volume: 28
year: 2021
- authors:
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
- family-names: Dixon
given-names: Caleb
affiliation: "Zagaran, Inc."
- family-names: Griffin
given-names: Keary
affiliation: "Rocket Farm Studios"
- family-names: Jaenicke
given-names: Tucker
affiliation: "Zagaran, Inc."
- family-names: Minowada
given-names: Leila
affiliation: "Zagaran, Inc."
- family-names: Esterkin
given-names: Sean
affiliation: "Zagaran, Inc."
- family-names: Siu
given-names: Alvin
affiliation: "Zagaran, Inc."
- family-names: Zagorsky
given-names: Josh
affiliation: "Zagaran, Inc."
- family-names: Jones
given-names: Eli
affiliation: "Zagaran, Inc."
doi: 10.21105/joss.03417
issue: 68
journal: "Journal of Open Source Software"
month: 12
start: 3417
title: "Beiwe: A data collection platform for high-throughput digital phenotyping"
type: article
volume: 6
year: 2021
- authors:
- family-names: Barnett
given-names: Ian
affiliation: "Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania"
orcid: "https://orcid.org/0000-0003-3256-5703"
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
doi: 10.1093/biostatistics/kxy059
end: e112
issue: 2
journal: Biostatistics
start: e98
title: "Inferring mobility measures from GPS with missing data"
type: article
volume: 21
year: 2020
- authors:
- family-names: Huang
given-names: Emily J.
affiliation: "Department of Mathematics and Statistics, Wake Forest University"
orcid: "https://orcid.org/0000-0003-1964-5231"
- family-names: Onnela
given-names: Jukka-Pekka
affiliation: "Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University"
orcid: "https://orcid.org/0000-0001-6613-8668"
doi: 10.3390/s20133706
issue: 13
journal: Sensors
start: 3706
title: "Augmented movelet method for activity classification using smartphone gyroscope and accelerometer data"
type: article
volume: 20
year: 2020