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Failed building wheel for dm.xmlsec.binding #177

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McPo opened this issue Jan 10, 2017 · 4 comments
Closed

Failed building wheel for dm.xmlsec.binding #177

McPo opened this issue Jan 10, 2017 · 4 comments

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@McPo
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McPo commented Jan 10, 2017

Appears to be an issue running pip install python-saml.

Its due to only having the 64-bit libxmlsec1 installed.

Im running El Capitan [OS X 10.11.6 (15G1212)], the command is being executed inside a virtualenv.
I already had libxmlsec1 installed, as its a dependency for another tool I use (oauth-tools). Although Ive also tried reinstalling via the brew command reinstall as well as by uninstalling and reinstalling. I also tried passing the --universal to brew, to install the libxmlsec1 32-bit, but no luck.

I notice that i386 is passed to the build command. Is it reasonable to build the 32-bit on OSX which I believe is only 64-bit?

cc -bundle -undefined dynamic_lookup -arch i386 -arch x86_64

Cheers
Emmet

Interesting Error:

 ld: warning: ignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylib
    ld: warning: ignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib
    ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture i386

Full Error:

Collecting defusedxml==0.4.1 (from python-saml)
Requirement already satisfied: setuptools in ./venv/lib/python2.7/site-packages (from dm.xmlsec.binding==1.3.2->python-saml)
Requirement already satisfied: lxml>=3.0 in ./venv/lib/python2.7/site-packages (from dm.xmlsec.binding==1.3.2->python-saml)
Building wheels for collected packages: dm.xmlsec.binding
  Running setup.py bdist_wheel for dm.xmlsec.binding ... error
  Complete output from command /Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-wzjKA1/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/tmpqNTs_vpip-wheel- --python-tag cp27:
  /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
    warnings.warn(msg)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.11-intel-2.7
  creating build/lib.macosx-10.11-intel-2.7/dm
  copying dm/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec
  copying dm/xmlsec/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tests.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tmpl.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  running egg_info
  writing requirements to dm.xmlsec.binding.egg-info/requires.txt
  writing dm.xmlsec.binding.egg-info/PKG-INFO
  writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
  writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
  writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
  writing requirements to dm.xmlsec.binding.egg-info/requires.txt
  writing dm.xmlsec.binding.egg-info/PKG-INFO
  writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
  writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
  writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
  reading manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
  writing manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
  copying dm/xmlsec/binding/LICENSE.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/README.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/VERSION.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tests.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/deskey.bin -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt-element-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rootcert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsacert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsakey.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsapub.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-bad-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-bad-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  running build_ext
  building 'dm.xmlsec.binding._xmlsec' extension
  creating build/temp.macosx-10.11-intel-2.7
  creating build/temp.macosx-10.11-intel-2.7/src
  cc -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -D__XMLSEC_FUNCTION__=__FUNCTION__ -DXMLSEC_NO_SIZE_T=1 -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1 -DXMLSEC_CRYPTO_OPENSSL=1 -DXMLSEC_CRYPTO=openssl -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml/includes -Isrc -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/libxml2 -I/usr/local/Cellar/libxmlsec1/1.2.20_1/include/xmlsec1 -I/usr/include/libxml2 -I/usr/local/opt/openssl/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/_xmlsec.c -o build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o
  src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
  static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                  ^
  src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
  static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                  ^
  src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
  static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                              ^
  src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
  static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                            ^
  src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
  static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                             ^
  src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                           ^
  src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                           ^
  src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
  static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                    ^
  10 warnings generated.
  src/_xmlsec.c:2195:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
    __pyx_v_n = __pyx_t_2;
              ~ ^~~~~~~~~
  src/_xmlsec.c:2915:68: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_key = xmlSecCryptoAppKeyLoadMemory(__pyx_v_c_data, __pyx_v_c_size, __pyx_v_c_key_data_format, __pyx_v_c_password, NULL, NULL);
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~                 ^~~~~~~~~~~~~~
  src/_xmlsec.c:3334:81: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_key = xmlSecKeyReadMemory(__pyx_v_key_data->id, __pyx_v_c_data, __pyx_v_c_size);
                        ~~~~~~~~~~~~~~~~~~~                                       ^~~~~~~~~~~~~~
  src/_xmlsec.c:4623:20: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
    __pyx_v_c_size = __pyx_t_1;
                   ~ ^~~~~~~~~
  src/_xmlsec.c:5676:106: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
    __pyx_v_rv = xmlSecTransformVerify(__pyx_v_ctx->signMethod, ((const xmlSecByte *)((char *)__pyx_t_3)), __pyx_t_4, (&__pyx_v_ctx->transformCtx));
                 ~~~~~~~~~~~~~~~~~~~~~                                                                     ^~~~~~~~~
  src/_xmlsec.c:6013:121: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
    __pyx_v_rv = xmlSecTransformCtxBinaryExecute((&__pyx_v_ctx->transformCtx), ((const xmlSecByte *)((char *)__pyx_t_6)), __pyx_t_7);
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                                                                          ^~~~~~~~~
  src/_xmlsec.c:6901:106: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_rv = xmlSecEncCtxBinaryEncrypt(__pyx_v_self->ctx, __pyx_v_tmpl->_c_node, __pyx_v_c_data, __pyx_v_c_size);
                       ~~~~~~~~~~~~~~~~~~~~~~~~~                                                           ^~~~~~~~~~~~~~
  src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
  static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                  ^
  src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
  static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                  ^
  src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
  static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                              ^
  src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
  static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                            ^
  src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
  static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                             ^
  src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                           ^
  src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                           ^
  src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
  static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                    ^
  17 warnings generated.
  cc -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -Wl,-F. build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/lib -L/usr/local/Cellar/libxmlsec1/1.2.20_1/lib -L/usr/local/opt/openssl/lib -lxml2 -lz -lpthread -licucore -lm -lxmlsec1-openssl -lxmlsec1 -lxslt -lcrypto -ldl -o build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/_xmlsec.so
  ld: warning: ld: warning: ignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylibignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib

  ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture i386
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command 'cc' failed with exit status 1

  ----------------------------------------
  Failed building wheel for dm.xmlsec.binding
  Running setup.py clean for dm.xmlsec.binding
Failed to build dm.xmlsec.binding
Installing collected packages: dm.xmlsec.binding, defusedxml, python-saml
  Running setup.py install for dm.xmlsec.binding ... error
    Complete output from command /Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-wzjKA1/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-68cUm3-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mcp/Sources/saltdna-portal/django_api/venv/include/site/python2.7/dm.xmlsec.binding:
    /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
      warnings.warn(msg)
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.11-intel-2.7
    creating build/lib.macosx-10.11-intel-2.7/dm
    copying dm/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec
    copying dm/xmlsec/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tests.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tmpl.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    running egg_info
    writing requirements to dm.xmlsec.binding.egg-info/requires.txt
    writing dm.xmlsec.binding.egg-info/PKG-INFO
    writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
    writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
    writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
    writing requirements to dm.xmlsec.binding.egg-info/requires.txt
    writing dm.xmlsec.binding.egg-info/PKG-INFO
    writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
    writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
    writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
    reading manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
    writing manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
    copying dm/xmlsec/binding/LICENSE.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/README.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/VERSION.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tests.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/deskey.bin -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt-element-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rootcert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsacert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsakey.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsapub.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-bad-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-bad-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    running build_ext
    building 'dm.xmlsec.binding._xmlsec' extension
    creating build/temp.macosx-10.11-intel-2.7
    creating build/temp.macosx-10.11-intel-2.7/src
    cc -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -D__XMLSEC_FUNCTION__=__FUNCTION__ -DXMLSEC_NO_SIZE_T=1 -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1 -DXMLSEC_CRYPTO_OPENSSL=1 -DXMLSEC_CRYPTO=openssl -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml/includes -Isrc -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/libxml2 -I/usr/local/Cellar/libxmlsec1/1.2.20_1/include/xmlsec1 -I/usr/include/libxml2 -I/usr/local/opt/openssl/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/_xmlsec.c -o build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o
    src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
    static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                    ^
    src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
    static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                    ^
    src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
    static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                                ^
    src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
    static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                              ^
    src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
    static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                               ^
    src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                             ^
    src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                             ^
    src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
    static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                      ^
    10 warnings generated.
    src/_xmlsec.c:2195:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
      __pyx_v_n = __pyx_t_2;
                ~ ^~~~~~~~~
    src/_xmlsec.c:2915:68: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_key = xmlSecCryptoAppKeyLoadMemory(__pyx_v_c_data, __pyx_v_c_size, __pyx_v_c_key_data_format, __pyx_v_c_password, NULL, NULL);
                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~                 ^~~~~~~~~~~~~~
    src/_xmlsec.c:3334:81: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_key = xmlSecKeyReadMemory(__pyx_v_key_data->id, __pyx_v_c_data, __pyx_v_c_size);
                          ~~~~~~~~~~~~~~~~~~~                                       ^~~~~~~~~~~~~~
    src/_xmlsec.c:4623:20: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
      __pyx_v_c_size = __pyx_t_1;
                     ~ ^~~~~~~~~
    src/_xmlsec.c:5676:106: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
      __pyx_v_rv = xmlSecTransformVerify(__pyx_v_ctx->signMethod, ((const xmlSecByte *)((char *)__pyx_t_3)), __pyx_t_4, (&__pyx_v_ctx->transformCtx));
                   ~~~~~~~~~~~~~~~~~~~~~                                                                     ^~~~~~~~~
    src/_xmlsec.c:6013:121: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
      __pyx_v_rv = xmlSecTransformCtxBinaryExecute((&__pyx_v_ctx->transformCtx), ((const xmlSecByte *)((char *)__pyx_t_6)), __pyx_t_7);
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                                                                          ^~~~~~~~~
    src/_xmlsec.c:6901:106: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_rv = xmlSecEncCtxBinaryEncrypt(__pyx_v_self->ctx, __pyx_v_tmpl->_c_node, __pyx_v_c_data, __pyx_v_c_size);
                         ~~~~~~~~~~~~~~~~~~~~~~~~~                                                           ^~~~~~~~~~~~~~
    src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
    static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                    ^
    src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
    static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                    ^
    src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
    static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                                ^
    src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
    static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                              ^
    src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
    static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                               ^
    src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                             ^
    src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                             ^
    src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
    static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                      ^
    17 warnings generated.
    cc -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -Wl,-F. build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/lib -L/usr/local/Cellar/libxmlsec1/1.2.20_1/lib -L/usr/local/opt/openssl/lib -lxml2 -lz -lpthread -licucore -lm -lxmlsec1-openssl -lxmlsec1 -lxslt -lcrypto -ldl -o build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/_xmlsec.so
    ld: warning: ignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1-openssl.dylib
    ld: warning: ignoring file /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/Cellar/libxmlsec1/1.2.20_1/lib/libxmlsec1.dylib
    ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture i386
    clang: error: linker command failed with exit code 1 (use -v to see invocation)
    error: command 'cc' failed with exit status 1

    ----------------------------------------
Command "/Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-wzjKA1/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-68cUm3-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mcp/Sources/saltdna-portal/django_api/venv/include/site/python2.7/dm.xmlsec.binding" failed with error code 1 in /private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-wzjKA1/dm.xmlsec.binding/
(venv) mcp-air:django_api mcp$
@McPo
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McPo commented Jan 10, 2017 •
edited
Loading

Got around the arch issues via

export ARCHFLAGS='-arch x86_64'
pip install python-saml

It no longer complains about archs but still fails. The crucial issue though is:

 ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture i386

which is supposedly caused by having XCode version Version 8.2.1 (8C1002) on El Capitan (ie need to update to Sierra)

Collecting python-saml
  Using cached python_saml-2.2.0-py2-none-any.whl
Requirement already satisfied: isodate>=0.5.0 in ./site-packages (from python-saml)
Collecting dm.xmlsec.binding==1.3.2 (from python-saml)
  Using cached dm.xmlsec.binding-1.3.2.tar.gz
Collecting defusedxml==0.4.1 (from python-saml)
Requirement already satisfied: setuptools in ./site-packages (from dm.xmlsec.binding==1.3.2->python-saml)
Requirement already satisfied: lxml>=3.0 in ./site-packages (from dm.xmlsec.binding==1.3.2->python-saml)
Building wheels for collected packages: dm.xmlsec.binding
  Running setup.py bdist_wheel for dm.xmlsec.binding ... error
  Complete output from command /Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-8HcVhs/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/tmpa0_cvZpip-wheel- --python-tag cp27:
  /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
    warnings.warn(msg)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.11-intel-2.7
  creating build/lib.macosx-10.11-intel-2.7/dm
  copying dm/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec
  copying dm/xmlsec/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tests.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tmpl.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  running egg_info
  writing requirements to dm.xmlsec.binding.egg-info/requires.txt
  writing dm.xmlsec.binding.egg-info/PKG-INFO
  writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
  writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
  writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
  writing requirements to dm.xmlsec.binding.egg-info/requires.txt
  writing dm.xmlsec.binding.egg-info/PKG-INFO
  writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
  writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
  writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
  reading manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
  writing manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
  copying dm/xmlsec/binding/LICENSE.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/README.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/VERSION.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  copying dm/xmlsec/binding/tests.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
  creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/deskey.bin -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt-element-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/encrypt3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rootcert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsacert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsakey.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/rsapub.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/sign3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-bad-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-bad-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  copying dm/xmlsec/binding/resources/verify4-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
  running build_ext
  building 'dm.xmlsec.binding._xmlsec' extension
  creating build/temp.macosx-10.11-intel-2.7
  creating build/temp.macosx-10.11-intel-2.7/src
  cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -pipe -arch x86_64 -D__XMLSEC_FUNCTION__=__FUNCTION__ -DXMLSEC_NO_SIZE_T=1 -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1 -DXMLSEC_CRYPTO_OPENSSL=1 -DXMLSEC_CRYPTO=openssl -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml/includes -Isrc -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/libxml2 -I/usr/local/Cellar/libxmlsec1/1.2.20_1/include/xmlsec1 -I/usr/include/libxml2 -I/usr/local/opt/openssl/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/_xmlsec.c -o build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o
  src/_xmlsec.c:2195:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
    __pyx_v_n = __pyx_t_2;
              ~ ^~~~~~~~~
  src/_xmlsec.c:2915:68: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_key = xmlSecCryptoAppKeyLoadMemory(__pyx_v_c_data, __pyx_v_c_size, __pyx_v_c_key_data_format, __pyx_v_c_password, NULL, NULL);
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~                 ^~~~~~~~~~~~~~
  src/_xmlsec.c:3334:81: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_key = xmlSecKeyReadMemory(__pyx_v_key_data->id, __pyx_v_c_data, __pyx_v_c_size);
                        ~~~~~~~~~~~~~~~~~~~                                       ^~~~~~~~~~~~~~
  src/_xmlsec.c:4623:20: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
    __pyx_v_c_size = __pyx_t_1;
                   ~ ^~~~~~~~~
  src/_xmlsec.c:5676:106: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
    __pyx_v_rv = xmlSecTransformVerify(__pyx_v_ctx->signMethod, ((const xmlSecByte *)((char *)__pyx_t_3)), __pyx_t_4, (&__pyx_v_ctx->transformCtx));
                 ~~~~~~~~~~~~~~~~~~~~~                                                                     ^~~~~~~~~
  src/_xmlsec.c:6013:121: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
    __pyx_v_rv = xmlSecTransformCtxBinaryExecute((&__pyx_v_ctx->transformCtx), ((const xmlSecByte *)((char *)__pyx_t_6)), __pyx_t_7);
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                                                                          ^~~~~~~~~
  src/_xmlsec.c:6901:106: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
          __pyx_v_rv = xmlSecEncCtxBinaryEncrypt(__pyx_v_self->ctx, __pyx_v_tmpl->_c_node, __pyx_v_c_data, __pyx_v_c_size);
                       ~~~~~~~~~~~~~~~~~~~~~~~~~                                                           ^~~~~~~~~~~~~~
  src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
  static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                  ^
  src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
  static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                  ^
  src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
  static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                              ^
  src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                 ^
  src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
  static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                            ^
  src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
  static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                             ^
  src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                           ^
  src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
  static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                           ^
  src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
  static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                    ^
  17 warnings generated.
  cc -bundle -undefined dynamic_lookup -Wl,-F. -arch x86_64 build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/lib -L/usr/local/Cellar/libxmlsec1/1.2.20_1/lib -L/usr/local/opt/openssl/lib -lxml2 -lz -lpthread -licucore -lm -lxmlsec1-openssl -lxmlsec1 -lxslt -lcrypto -ldl -o build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/_xmlsec.so
  ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command 'cc' failed with exit status 1

  ----------------------------------------
  Failed building wheel for dm.xmlsec.binding
  Running setup.py clean for dm.xmlsec.binding
Failed to build dm.xmlsec.binding
Installing collected packages: dm.xmlsec.binding, defusedxml, python-saml
  Running setup.py install for dm.xmlsec.binding ... error
    Complete output from command /Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-8HcVhs/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-6Me7eV-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mcp/Sources/saltdna-portal/django_api/venv/include/site/python2.7/dm.xmlsec.binding:
    /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
      warnings.warn(msg)
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.11-intel-2.7
    creating build/lib.macosx-10.11-intel-2.7/dm
    copying dm/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec
    copying dm/xmlsec/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/__init__.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tests.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tmpl.py -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    running egg_info
    writing requirements to dm.xmlsec.binding.egg-info/requires.txt
    writing dm.xmlsec.binding.egg-info/PKG-INFO
    writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
    writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
    writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
    writing requirements to dm.xmlsec.binding.egg-info/requires.txt
    writing dm.xmlsec.binding.egg-info/PKG-INFO
    writing namespace_packages to dm.xmlsec.binding.egg-info/namespace_packages.txt
    writing top-level names to dm.xmlsec.binding.egg-info/top_level.txt
    writing dependency_links to dm.xmlsec.binding.egg-info/dependency_links.txt
    reading manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
    writing manifest file 'dm.xmlsec.binding.egg-info/SOURCES.txt'
    copying dm/xmlsec/binding/LICENSE.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/README.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/VERSION.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    copying dm/xmlsec/binding/tests.txt -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding
    creating build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/deskey.bin -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt-element-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/encrypt3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rootcert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsacert.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsakey.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/rsapub.pem -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign1-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign1-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign2-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign2-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign3-doc.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/sign3-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-bad-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-bad-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-res.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    copying dm/xmlsec/binding/resources/verify4-tmpl.xml -> build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/resources
    running build_ext
    building 'dm.xmlsec.binding._xmlsec' extension
    creating build/temp.macosx-10.11-intel-2.7
    creating build/temp.macosx-10.11-intel-2.7/src
    cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -pipe -arch x86_64 -D__XMLSEC_FUNCTION__=__FUNCTION__ -DXMLSEC_NO_SIZE_T=1 -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1 -DXMLSEC_CRYPTO_OPENSSL=1 -DXMLSEC_CRYPTO=openssl -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml -I/Users/mcp/Sources/saltdna-portal/django_api/venv/lib/python2.7/site-packages/lxml/includes -Isrc -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/libxml2 -I/usr/local/Cellar/libxmlsec1/1.2.20_1/include/xmlsec1 -I/usr/include/libxml2 -I/usr/local/opt/openssl/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/_xmlsec.c -o build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o
    src/_xmlsec.c:2195:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
      __pyx_v_n = __pyx_t_2;
                ~ ^~~~~~~~~
    src/_xmlsec.c:2915:68: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_key = xmlSecCryptoAppKeyLoadMemory(__pyx_v_c_data, __pyx_v_c_size, __pyx_v_c_key_data_format, __pyx_v_c_password, NULL, NULL);
                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~                 ^~~~~~~~~~~~~~
    src/_xmlsec.c:3334:81: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_key = xmlSecKeyReadMemory(__pyx_v_key_data->id, __pyx_v_c_data, __pyx_v_c_size);
                          ~~~~~~~~~~~~~~~~~~~                                       ^~~~~~~~~~~~~~
    src/_xmlsec.c:4623:20: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
      __pyx_v_c_size = __pyx_t_1;
                     ~ ^~~~~~~~~
    src/_xmlsec.c:5676:106: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
      __pyx_v_rv = xmlSecTransformVerify(__pyx_v_ctx->signMethod, ((const xmlSecByte *)((char *)__pyx_t_3)), __pyx_t_4, (&__pyx_v_ctx->transformCtx));
                   ~~~~~~~~~~~~~~~~~~~~~                                                                     ^~~~~~~~~
    src/_xmlsec.c:6013:121: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'unsigned int' [-Wshorten-64-to-32]
      __pyx_v_rv = xmlSecTransformCtxBinaryExecute((&__pyx_v_ctx->transformCtx), ((const xmlSecByte *)((char *)__pyx_t_6)), __pyx_t_7);
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                                                                          ^~~~~~~~~
    src/_xmlsec.c:6901:106: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
            __pyx_v_rv = xmlSecEncCtxBinaryEncrypt(__pyx_v_self->ctx, __pyx_v_tmpl->_c_node, __pyx_v_c_data, __pyx_v_c_size);
                         ~~~~~~~~~~~~~~~~~~~~~~~~~                                                           ^~~~~~~~~~~~~~
    src/_xmlsec.c:13502:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
    static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                    ^
    src/_xmlsec.c:13511:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
    static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                    ^
    src/_xmlsec.c:13525:29: warning: unused function '__Pyx_PyInt_AsSize_t' [-Wunused-function]
    static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
                                ^
    src/_xmlsec.c:568:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:588:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
    static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
                                   ^
    src/_xmlsec.c:12788:27: warning: unused function '__Pyx_PyInt_AsChar' [-Wunused-function]
    static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
                              ^
    src/_xmlsec.c:12807:28: warning: unused function '__Pyx_PyInt_AsShort' [-Wunused-function]
    static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
                               ^
    src/_xmlsec.c:12826:26: warning: unused function '__Pyx_PyInt_AsInt' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
                             ^
    src/_xmlsec.c:12902:26: warning: unused function '__Pyx_PyInt_AsLongDouble' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
                             ^
    src/_xmlsec.c:13026:35: warning: function '__Pyx_PyInt_AsLongLong' is not needed and will not be emitted [-Wunneeded-internal-declaration]
    static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
                                      ^
    17 warnings generated.
    cc -bundle -undefined dynamic_lookup -Wl,-F. -arch x86_64 build/temp.macosx-10.11-intel-2.7/src/_xmlsec.o -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/lib -L/usr/local/Cellar/libxmlsec1/1.2.20_1/lib -L/usr/local/opt/openssl/lib -lxml2 -lz -lpthread -licucore -lm -lxmlsec1-openssl -lxmlsec1 -lxslt -lcrypto -ldl -o build/lib.macosx-10.11-intel-2.7/dm/xmlsec/binding/_xmlsec.so
    ld: file not found: /usr/lib/system/libsystem_symptoms.dylib for architecture x86_64
    clang: error: linker command failed with exit code 1 (use -v to see invocation)
    error: command 'cc' failed with exit status 1

    ----------------------------------------
Command "/Users/mcp/Sources/saltdna-portal/django_api/venv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-8HcVhs/dm.xmlsec.binding/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-6Me7eV-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mcp/Sources/saltdna-portal/django_api/venv/include/site/python2.7/dm.xmlsec.binding" failed with error code 1 in /private/var/folders/8g/v0_f7vtd09x0j2zg8kv2lk9w0000gn/T/pip-build-8HcVhs/dm.xmlsec.binding/

@pitbulk
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pitbulk commented Jan 10, 2017

Have you reviewed that thread?
#30

@McPo
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McPo commented Jan 10, 2017

@pitbulk Thanks, I did notice that issue however it was related to Linux and isn't comparable with OSX. As OSX is only 64-bit and doesn't have the dev packages.

I initially thought this issue was caused by attempting to build 32-bit on OSX.
However that warning wasn't indicative of the actual error. The error was caused by Apple choosing not to fully support XCode 8 on ElCapitan.

I followed the advice here http://stackoverflow.com/a/40315953/1167880, and it corrected the issue.
I was initially hesitant to execute the script as it removes references to that file. It appears to be generally unused but XCode complains about it missing.

I also thought it might have required disabling system integrity protection (Which I was also hesitant about), but it doesn't. If it turns out to an issue later, a reinstall of XCode should correct it.

Everyone is up and working.

Thanks,
Emmet

@McPo McPo closed this as completed Jan 10, 2017
@jerkyrs
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jerkyrs commented Oct 26, 2017 •
edited
Loading

This worked for me on Centos 7 venv many issues with LXML / Xmlsec.binding but this seems to be the root cause of it

export ARCHFLAGS='-arch x86_64' pip install pysaml2==3.0.0

I was getting this error beforehand
ImportError: lxml.etree does not export expected C function adoptExternalDocument
See this other thread referenced earlier
30

This was referenced Oct 26, 2017
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@pitbulk @McPo @jerkyrs