From 5b0481bcb927fe14afa7e0ef7c45857850ff0685 Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Wed, 15 Mar 2023 14:04:12 +0000 Subject: [PATCH 1/6] add entry for 5.6.7 --- history.rst | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/history.rst b/history.rst index 399b08f58b6..af6c72cf016 100644 --- a/history.rst +++ b/history.rst @@ -5,6 +5,37 @@ OMERO version history ===================== +5.6.7 (March 2023) +------------------ + +This release includes the following upgrade of the OMERO.server Java components: + +- omero-gateway-java 5.7.2 +- omero-blitz 5.6.2 +- omero-server 5.6.7 +- omero-renderer 5.5.12 +- omero-romio 5.7.2 +- omero-common 5.6.1 +- omero-model 5.6.10 + + +Improvements include: + +- address performance issues when indexing fileset +- add option to configure fileset indexing +- run the PixelDataThread Application events in SYSTEM Thread pool. +- Declare logback-classic as explicit dependency and set to 1.2.x. +- an upgrade of Bio-Formats to version 6.12.0 + +**Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please +see the upgrade guide for further information. + +This version of the OMERO.server has been tested with: + +- OMERO.py 5.13.1 +- OMERO.web 5.18.0 +- OMERO.dropbox 5.6.2 + 5.6.6 (December 2022) --------------------- From 7ebf9259fd9ec287bcc65f1f0c122b6ffcab59d4 Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Thu, 16 Mar 2023 13:53:28 +0000 Subject: [PATCH 2/6] add indexing parameter --- history.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/history.rst b/history.rst index af6c72cf016..7cda93b0932 100644 --- a/history.rst +++ b/history.rst @@ -22,7 +22,7 @@ This release includes the following upgrade of the OMERO.server Java components: Improvements include: - address performance issues when indexing fileset -- add option to configure fileset indexing +- add ``omero.search.max_fileset_size`` parameter to indicated the maximum size of the fileset to be considered for indexing - run the PixelDataThread Application events in SYSTEM Thread pool. - Declare logback-classic as explicit dependency and set to 1.2.x. - an upgrade of Bio-Formats to version 6.12.0 From e0b9cc289fac96187bdd6de4687a6eff0d8a9222 Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Thu, 16 Mar 2023 13:56:08 +0000 Subject: [PATCH 3/6] add indexing recommendation --- history.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/history.rst b/history.rst index 7cda93b0932..a9c33a11847 100644 --- a/history.rst +++ b/history.rst @@ -29,6 +29,7 @@ Improvements include: **Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please see the upgrade guide for further information. +We also recommend to re-index the database especially if the OMERO server has a large number of High Content Screening data. This version of the OMERO.server has been tested with: From 19fc46437cf1bef02a723d5eadd5b75eec81133a Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Fri, 17 Mar 2023 09:54:25 +0000 Subject: [PATCH 4/6] bump gateway version --- history.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/history.rst b/history.rst index a9c33a11847..93239640dae 100644 --- a/history.rst +++ b/history.rst @@ -10,7 +10,7 @@ OMERO version history This release includes the following upgrade of the OMERO.server Java components: -- omero-gateway-java 5.7.2 +- omero-gateway-java 5.8.0 - omero-blitz 5.6.2 - omero-server 5.6.7 - omero-renderer 5.5.12 From 1efc7027e257d455428a157a92ac6ccca6c222a5 Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Fri, 17 Mar 2023 11:33:23 +0000 Subject: [PATCH 5/6] adjust formatting --- history.rst | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/history.rst b/history.rst index 93239640dae..46e0242802d 100644 --- a/history.rst +++ b/history.rst @@ -22,9 +22,9 @@ This release includes the following upgrade of the OMERO.server Java components: Improvements include: - address performance issues when indexing fileset -- add ``omero.search.max_fileset_size`` parameter to indicated the maximum size of the fileset to be considered for indexing -- run the PixelDataThread Application events in SYSTEM Thread pool. -- Declare logback-classic as explicit dependency and set to 1.2.x. +- add ``omero.search.max_fileset_size`` property to indicated the maximum size of the fileset to be considered for indexing +- run the PixelDataThread Application events in SYSTEM Thread pool +- declare logback-classic as explicit dependency and set to 1.2.x - an upgrade of Bio-Formats to version 6.12.0 **Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please From 8f453b4ca03b4a831fa033e8d21ea76771d8732c Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Fri, 17 Mar 2023 14:30:39 +0000 Subject: [PATCH 6/6] point to omero-web 5.19.0 --- history.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/history.rst b/history.rst index 46e0242802d..ead288c972a 100644 --- a/history.rst +++ b/history.rst @@ -34,7 +34,7 @@ We also recommend to re-index the database especially if the OMERO server has a This version of the OMERO.server has been tested with: - OMERO.py 5.13.1 -- OMERO.web 5.18.0 +- OMERO.web 5.19.0 - OMERO.dropbox 5.6.2 5.6.6 (December 2022)