From 2a7982f30befb1e311460166bc41a16d428d20db Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Tue, 4 Jul 2023 19:19:33 +0200 Subject: [PATCH] Update uberon-edit.obo --- src/ontology/uberon-edit.obo | 55 ++++++++++++++++++++++++++++++++++++ 1 file changed, 55 insertions(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 7ec6495752..485516884c 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -2174,6 +2174,7 @@ def: "The surface (external) layer of ectoderm which begins to proliferate short subset: pheno_slim synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [MP:0012532] +xref: BTO:0006242 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! external ectoderm xref: EHDAA2:0001968 xref: EHDAA:1494 xref: EHDAA:350 @@ -4991,6 +4992,7 @@ property_value: taxon_notes "In humans it is a tendon-like structure that has de id: UBERON:0000353 name: parenchyma def: "Functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [Wikipedia:Parenchyma] +xref: BTO:0001539 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! parenchyma xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 @@ -35974,6 +35976,7 @@ synonym: "nucleus preopticus lateralis" RELATED LATIN [NeuroNames:381] xref: BAMS:LPO xref: BIRNLEX:1722 xref: BM:Die-Hy-LPO +xref: BTO:0006166 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! nucleus preopticus lateralis xref: DHBA:10471 xref: EMAPA:35483 xref: FMA:62326 @@ -36599,6 +36602,7 @@ xref: BAMS:R xref: BAMS:RN xref: BIRNLEX:1478 xref: BM:MB-RN +xref: BTO:0006329 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! red nucleus xref: DHBA:12247 xref: EHDAA2:0004706 xref: EMAPA:35724 @@ -39171,6 +39175,7 @@ synonym: "nucleus praeopticus medialis" RELATED LATIN [NeuroNames:380] synonym: "nucleus preopticus medialis" RELATED LATIN [NeuroNames:380] xref: BAMS:MPO xref: BIRNLEX:706 +xref: BTO:0006167 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! nucleus preopticus medialis xref: DHBA:10470 xref: DMBA:15604 xref: EMAPA:35549 @@ -42482,6 +42487,7 @@ xref: FMA:72429 xref: HBA:9021 xref: MA:0001020 xref: MBA:1052 +xref: MESH:D045042 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! Pedunculopontine Tegmental Nucleus xref: neuronames:504 {source="BIRNLEX:1437"} xref: UMLS:C0262306 {source="BIRNLEX:1437"} xref: Wikipedia:Pedunculopontine_tegmental_nucleus @@ -44762,6 +44768,7 @@ def: "Group of neurons situated on the ventral surface of the fornix at the leve subset: uberon_slim synonym: "organum subfornicale" RELATED LATIN [Wikipedia:Subfornical_organ] xref: BAMS:SFO +xref: BTO:0006266 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! subfornical organ xref: DHBA:12104 xref: EMAPA:35830 xref: FMA:75260 @@ -45913,6 +45920,7 @@ def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue subset: uberon_slim synonym: "coeliac ganglion" EXACT [FMA:77570] xref: BAMS:GCE +xref: BTO:0006296 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! celiac ganglion xref: EHDAA2:0000266 xref: EHDAA:8946 xref: EMAPA:19321 @@ -50297,6 +50305,7 @@ subset: vertebrate_core synonym: "vertebra bone" EXACT [] synonym: "vertebrae" EXACT PLURAL [PHENOSCAPE:ad] xref: AAO:0000691 +xref: BTO:0006196 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! vertebra xref: CALOHA:TS-2352 xref: EFO:0001371 xref: EMAPA:32740 @@ -50841,6 +50850,7 @@ xref: BAMS:LH xref: BAMS:LHA xref: BIRNLEX:4037 xref: BM:Die-Hy-HLA +xref: BTO:0006481 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! lateral hypothalamus xref: EMAPA:35480 xref: FMA:62030 xref: GAID:640 @@ -55645,6 +55655,7 @@ xref: BAMS:MEPO xref: BAMS:MnPO xref: BIRNLEX:1208 xref: BM:MPO +xref: BTO:0006168 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! nucleus preopticus medianus xref: DHBA:13063 xref: FMA:62323 xref: HBA:4548 @@ -57205,6 +57216,7 @@ xref: BAMS:OV xref: BAMS:SoC xref: BAMS:VOLT xref: BIRNLEX:1400 +xref: BTO:0006268 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! organum vasculosum laminae terminalis xref: DHBA:12106 xref: DMBA:15582 xref: EMAPA:37742 {source="MA:th"} @@ -57719,6 +57731,7 @@ xref: BAMS:P xref: BIRNLEX:1464 xref: BM:CST xref: BM:Me-PyT +xref: BTO:0006132 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! corticospinal tract xref: DHBA:12776 xref: DMBA:17756 xref: EMAPA:36600 @@ -57972,6 +57985,7 @@ synonym: "tractus rubrospinalis" RELATED LATIN [Wikipedia:Rubrospinal_tract] xref: BAMS:rs xref: BAMS:rust xref: BIRNLEX:1476 +xref: BTO:0006159 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! rubrospinal tract xref: DHBA:12782 xref: DMBA:17792 xref: FMA:72640 @@ -58883,6 +58897,7 @@ synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BAMS:ITG xref: BIRNLEX:1577 xref: BM:Tel-ITG +xref: BTO:0006175 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! inferior temporal gyrus xref: DHBA:12142 xref: FMA:61907 xref: HBA:4147 @@ -58908,6 +58923,7 @@ synonym: "tractus olivocerebellaris" RELATED LATIN [NeuroNames:804] xref: BAMS:oc xref: BAMS:oct xref: BIRNLEX:1579 +xref: BTO:0006157 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! olivocerebellar fiber system xref: DHBA:12747 xref: FMA:72638 xref: MBA:404 @@ -59359,6 +59375,7 @@ synonym: "gyrus temporalis superior" RELATED LATIN [Wikipedia:Superior_temporal_ xref: BAMS:STG xref: BIRNLEX:1648 xref: BM:Tel-STG +xref: BTO:0006177 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! superior temporal gyrus xref: DHBA:12140 xref: EFO:0001944 xref: FMA:61905 @@ -59410,6 +59427,7 @@ synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] synonym: "middle (medial) temporal gyrus" RELATED [BAMS:MTG] xref: BAMS:MTG xref: BIRNLEX:1653 +xref: BTO:0006176 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! middle temporal gyrus xref: DHBA:12141 xref: EFO:0002466 xref: FMA:61906 @@ -65432,6 +65450,7 @@ synonym: "olfactory placodes" EXACT PLURAL [] synonym: "placoda nasalis" EXACT LATIN [] synonym: "placoda olfactoria" EXACT LATIN [] xref: AAO:0011076 +xref: BTO:0006222 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! olfactory placode xref: EFO:0003420 xref: EHDAA2:0001232 xref: EHDAA:1504 @@ -65592,6 +65611,7 @@ synonym: "epitrichium" RELATED [MP:0013530] synonym: "EVL" RELATED [ZFA:0001185] synonym: "periderm" RELATED [] synonym: "skin periderm" EXACT [EHDAA2:0001846] +xref: BTO:0003377 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! periderm xref: EHDAA2:0001846 xref: EHDAA:6538 xref: FMA:295662 @@ -65701,6 +65721,7 @@ synonym: "archinephric duct" RELATED [VHOG:0000082] synonym: "ductus pronephricus" RELATED LATIN [Wikipedia:Pronephric_duct] synonym: "pronephric ducts" RELATED PLURAL [ZFA:0000150] xref: AAO:0011088 +xref: BTO:0005991 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! pronephric duct xref: NCIT:C34279 xref: SCTID:361406002 xref: TAO:0000150 @@ -66125,6 +66146,7 @@ synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546] xref: AAO:0000637 +xref: BTO:0005990 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! mesonephric duct xref: EHDAA2:0001243 xref: EHDAA:1590 xref: EMAPA:16577 @@ -66530,6 +66552,7 @@ synonym: "sclerotomes" EXACT PLURAL [TAO:0001080] synonym: "sclerotomus" RELATED LATIN [Wikipedia:Sclerotome] xref: AAO:0010571 xref: AEO:0000212 +xref: BTO:0006255 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! sclerotome xref: EHDAA2:0003439 xref: EMAPA:31159 xref: FMA:295652 @@ -76143,6 +76166,7 @@ synonym: "floor of mouth" EXACT [FMA:86592] synonym: "floor of oval cavity" EXACT [] synonym: "floor of the oval cavity" EXACT [] synonym: "sublingual region" NARROW [GAID:1283] +xref: BTO:0006184 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! mouth floor xref: CALOHA:TS-2207 xref: EFO:0001923 xref: EMAPA:37911 {source="MA:th"} @@ -76314,6 +76338,7 @@ comment: Design pattern notes: check whether this fits the foramen design patter subset: pheno_slim subset: vertebrate_core xref: AAO:0010826 +xref: BTO:0006035 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! foramen magnum xref: EMAPA:37868 {source="MA:th"} xref: FMA:75306 xref: GAID:228 @@ -78961,6 +78986,7 @@ synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [FMA:242811] +xref: BTO:0006008 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! choroid plexus epithelium xref: EMAPA:36608 xref: FMA:242811 xref: MA:0000824 @@ -79381,6 +79407,7 @@ synonym: "gland of reproductive system" EXACT [OBOL:automatic] synonym: "reproductive gland" EXACT [MA:0001751] synonym: "reproductive system gland" EXACT [OBOL:automatic] synonym: "sex gland" EXACT [MP:0000653] +xref: BTO:0006162 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! reproductive gland xref: MA:0001751 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000990 ! reproductive system @@ -80622,6 +80649,7 @@ synonym: "epimere mesoderm" RELATED [] synonym: "mesenchyma dermatomiale" RELATED LATIN [Wikipedia:Dermatomal_mesenchyme] xref: AAO:0011028 xref: AEO:0001017 +xref: BTO:0006248 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! dermatome xref: EHDAA2_RETIRED:0003428 xref: EHDAA:1719 xref: EHDAA:1725 @@ -89475,6 +89503,7 @@ synonym: "otic region" RELATED [] synonym: "periotic" RELATED [] synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 +xref: BTO:0005981 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! auditory capsule xref: SCTID:361515007 xref: VHOG:0000854 is_a: UBERON:0010363 ! endochondral element @@ -101051,6 +101080,7 @@ subset: pheno_slim synonym: "circumventricular organ" EXACT [NLXANAT:20090312] synonym: "circumventricular organ of neuraxis" EXACT [FMA:84081] synonym: "CVO" EXACT ABBREVIATION [NLXANAT:20090312] +xref: BTO:0006267 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! circumventricular organ xref: EMAPA:35243 xref: FMA:84081 xref: MA:0002942 @@ -102817,6 +102847,7 @@ def: "Multi-tissue structure that arises from the heart rudiment and will become subset: vertebrate_core synonym: "early primitive heart tube" NARROW [EMAPA:16208] synonym: "primitive heart tube" EXACT [EMAPA:16215] +xref: BTO:0006179 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! cardiac tube xref: EHDAA2:0001512 xref: EHDAA:424 xref: EHDAA:436 @@ -122759,6 +122790,7 @@ name: spinothalamic tract def: "A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org)." [NLXANAT:1010017] xref: BAMS:spth xref: BAMS:stt +xref: BTO:0006128 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! spinothalamic tract xref: DHBA:12789 xref: MBA:871 xref: MESH:D013133 @@ -128581,6 +128613,7 @@ synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] xref: AAO:0001004 +xref: BTO:0006219 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! neuromast xref: EFO:0003513 xref: TAO:0000243 xref: ZFA:0000243 @@ -130551,6 +130584,7 @@ name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555] +xref: BTO:0006250 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! epibranchial ganglion xref: TAO:0001555 xref: ZFA:0001555 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion @@ -142936,6 +142970,7 @@ def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim synonym: "pharyngeal arch cartilages" EXACT PLURAL [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] +xref: BTO:0006051 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! pharyngeal arch cartilage xref: EFO:0003689 xref: TAO:0001460 xref: ZFA:0001460 @@ -149028,6 +149063,7 @@ id: UBERON:0011895 name: endomysium def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [Wikipedia:Endomysium] synonym: "fascia of muscle fiber" EXACT [FMA:9729] +xref: BTO:0006241 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! endomysium xref: FMA:9729 xref: NCIT:C32517 xref: SCTID:91739007 @@ -149128,6 +149164,7 @@ def: "Plantaris is a vestigial structure and one of the superficial muscles of t subset: efo_slim synonym: "musculus plantaris" EXACT LATIN [] synonym: "plantaris" EXACT [FMA:22543] +xref: BTO:0006312 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! plantaris muscle xref: EFO:0001979 xref: EMAPA:36254 xref: FMA:22543 @@ -155030,6 +155067,7 @@ synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilis" RELATED [Wikipedia:Rete_mirabile] synonym: "retie mirabilia" RELATED PLURAL [Wikipedia:Rete_mirabile] synonym: "wonderful net" RELATED [Wikipedia:Rete_mirabile] +xref: BTO:0006363 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! rete mirabile xref: FMA:76728 xref: Wikipedia:Rete_mirabile is_a: UBERON:0002049 ! vasculature @@ -158506,6 +158544,7 @@ subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] synonym: "portion of arterial blood" EXACT [FMA:83066] +xref: BTO:0006188 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! arterial blood xref: FMA:83066 intersection_of: UBERON:0000178 ! blood intersection_of: located_in UBERON:0001637 ! artery @@ -158517,6 +158556,7 @@ def: "A blood that is part of a vein." [OBOL:automatic] synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] +xref: BTO:0006187 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! venous blood xref: FMA:83067 intersection_of: UBERON:0000178 ! blood intersection_of: located_in UBERON:0001638 ! vein @@ -165427,6 +165467,7 @@ def: "Light reflecting layer found in a variety of different types of eye." [htt subset: functional_classification synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] +xref: BTO:0001350 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! tapetum xref: SPD:0000343 is_a: UBERON:0000479 ! tissue relationship: has_quality PATO:0001297 ! reflectivity @@ -181781,6 +181822,7 @@ def: "One of several small clusters of chemoreceptors, baroreceptors, and suppor synonym: "aortic bodies" RELATED PLURAL [Wikipedia:Aortic_body] synonym: "aortic glands" RELATED PLURAL [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] +xref: BTO:0006193 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! aortic body xref: MESH:D001016 xref: NCIT:C97112 xref: SCTID:75061007 @@ -182387,6 +182429,7 @@ is_a: UBERON:0000058 ! duct [Term] id: UBERON:0035053 name: interlobular duct of salivary gland +xref: BTO:0006341 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! excretory duct xref: FMA:60053 intersection_of: UBERON:0014716 ! interlobular duct intersection_of: part_of UBERON:0001044 ! saliva-secreting gland @@ -187760,6 +187803,7 @@ relationship: present_in_taxon NCBITaxon:8292 ! Amphibia [Term] id: UBERON:0036243 name: vaginal fluid +xref: BTO:0003084 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! vaginal fluid def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] @@ -191545,6 +191589,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000293 name: synencephalon +xref: BTO:0006476 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! synencephalon xref: ZFA:0000293 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001894 ! diencephalon @@ -191577,6 +191622,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000298 name: vent +xref: BTO:0006431 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! vagal lobe xref: ZFA:0000298 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -191827,6 +191873,7 @@ synonym: "branchiospine" EXACT [PSPUB:0000164] synonym: "gill rakers" EXACT PLURAL [TAO:0000356] synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] +xref: BTO:0002149 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! gill raker xref: ZFA:0000356 is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia @@ -211916,6 +211963,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010489 name: muscular artery +xref: BTO:0004724 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! animal cap def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001070 ! external carotid artery @@ -212241,6 +212289,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010586 name: vasa efferentia +xref: BTO:0002254 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! vas efferens def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -213984,6 +214033,7 @@ def: "Median fin that is located posterior to the anus." [TAO:curator] synonym: "nageoire anale" EXACT [PSPUB:0000164] synonym: "proctoptère" EXACT [PSPUB:0000136] synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] +xref: BTO:0004652 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! anal fin xref: ZFA:0001162 intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4000166 ! anal fin skeleton @@ -213999,6 +214049,7 @@ synonym: "tail" RELATED [VSAO:0000164] synonym: "tail fin" RELATED [VSAO:0000164] synonym: "uroptère" EXACT [PSPUB:0000135] synonym: "uroptérygie" EXACT [PSPUB:0000140] +xref: BTO:0001827 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! tail fin xref: ZFA:0001058 intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4000167 ! caudal fin skeleton @@ -216997,6 +217048,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300194 name: photophore +xref: BTO:0001477 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! photophore def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -222772,6 +222824,7 @@ name: cerebral nuclei def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) synonym: "CNU" EXACT [MBA:623] +xref: BTO:0006534 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! cerebral nucleus xref: DHBA:10331 xref: HBA:4275 xref: MBA:623 @@ -223424,6 +223477,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/476" xsd: [Term] id: UBERON:8450002 name: excretory system +xref: BTO:0006338 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! excretory system def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0046903 ! secretion @@ -223825,6 +223879,7 @@ property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime [Term] id: UBERON:8480040 name: ovarian fluid +xref: BTO:0004569 {http://purl.org/dc/terms/contributor="https://orcid.org/orcid:0000-0003-4423-4370"} ! ovarian fluid def: "Fish ovary secretion released with eggs." [PMID:8526977] is_a: UBERON:0006537 ! female reproductive gland secretion relationship: dc-contributor https://orcid.org/0000-0002-0819-0473