From 2e90bf5872bef1987ac15b2619cc3a4196e77e53 Mon Sep 17 00:00:00 2001
From: "Peter St. John" <pstjohn@nvidia.com>
Date: Mon, 13 Jan 2025 09:54:43 -0700
Subject: [PATCH] pin cdifflib version (#593)

### Description
Pins the version of cdifflib to avoid a build failure. See
mduggan/cdifflib#13

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [x]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [ ]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by checking relevant boxes below. This will
automatically apply labels.

- [ ]
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
- [ ]
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

### Usage
<!--- How does a user interact with the changed code -->
```python
TODO: Add code snippet
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [ ] I have tested these changes locally
 - [ ] I have updated the documentation accordingly
 - [ ] I have added/updated tests as needed
 - [ ] All existing tests pass successfully

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
---
 requirements-test.txt | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/requirements-test.txt b/requirements-test.txt
index 567b990cb7..6db42c79b1 100644
--- a/requirements-test.txt
+++ b/requirements-test.txt
@@ -13,3 +13,7 @@ pyfaidx==0.8.1.3
 # See https://nvidia.slack.com/archives/C02A7LYGHK8/p1734727482697309
 pytorch-lightning<2.5.0
 lightning<2.5.0
+
+# Temporary cdifflib pin, see
+# https://github.com/mduggan/cdifflib/issues/13
+cdifflib<=1.2.6